Class EeWriteServiceImplExistingBioMaterialTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.util.test.BaseIntegrationTest5

ubic.gemma.core.util.test.BaseSpringContextTest5

ubic.gemma.persistence.persister.EeWriteServiceImplExistingBioMaterialTest

public class EeWriteServiceImplExistingBioMaterialTest
extends BaseSpringContextTest5

A new experiment must not attach its BioAssays to BioMaterials another experiment already uses.

BioMaterialDao.findOrCreate matches a sample with no accession and no description by name and taxon alone, so without the skip the second experiment below would share <prefix>_shared with the first. That is how HBCC_Cohort's 2026-09-29 re-add came to use 178 of Aging_Cohort's BioMaterials, after the skip was lost in the ExpressionPersister → EeWriteServiceImpl move.

Field Summary

Fields inherited from class BaseSpringContextTest5

arrayDesignPersister, externalDatabaseService, log, persisterHelper, taxonService, testHelper

Constructor Summary

Constructors

Constructor	Description
EeWriteServiceImplExistingBioMaterialTest()

Method Summary

Modifier and Type	Method	Description
void	testSamplesWhoseBioMaterialsAlreadyExistAreSkipped()

Methods inherited from class BaseSpringContextTest5

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class BaseIntegrationTest5

setUpAuthentication, tearDownSecurityContext

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

EeWriteServiceImplExistingBioMaterialTest

public EeWriteServiceImplExistingBioMaterialTest()

Method Details

testSamplesWhoseBioMaterialsAlreadyExistAreSkipped

@Test
@Transactional
public void testSamplesWhoseBioMaterialsAlreadyExistAreSkipped()