List of all 20,299 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Rana, Rajiv et al. (2024) Glomerular-tubular crosstalk via cold shock Y-box binding protein-1 in the kidney.; Kidney Int, 105: 65-83 |
|
GSE239313 |
| Ranade, Sanjeev S et al. (2014) Piezo1, a mechanically activated ion channel, is required for vascular development in mice.; Proc Natl Acad Sci U S A, 111: 10347-52 |
|
GSE193099 |
| Randall, Louise M et al. (2008) Common strategies to prevent and modulate experimental cerebral malaria in mouse strains with different susceptibilities.; Infect Immun, 76: 3312-20 |
|
GSE6019 |
| Rangasamy, Tirumalai et al. (2009) Cigarette smoke-induced emphysema in A/J mice is associated with pulmonary oxidative stress, apoptosis of lung cells, and global alterations in gene expression.; Am J Physiol Lung Cell Mol Physiol, 296: L888-900 |
|
GSE8790 |
| Rangel, Alejandra et al. (2009) Regulation of GABA(A) and glutamate receptor expression, synaptic facilitation and long-term potentiation in the hippocampus of prion mutant mice.; PLoS One, 4: e7592 |
|
GSE16223 |
| Rangel-Salazar, Rubén et al. (2011) Human native lipoprotein-induced de novo DNA methylation is associated with repression of inflammatory genes in THP-1 macrophages.; BMC Genomics, 12: 582 |
|
GSE9101 |
| Rani, Neha et al. (2016) A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA.; Neuron, 90: 1174-1188 |
|
GSE73982 |
| Rankin, Lucille C et al. (2016) Complementarity and redundancy of IL-22-producing innate lymphoid cells.; Nat Immunol, 17: 179-86 |
|
GSE72909 |
| Ransom, Linnea S et al. (2024) Human brain small extracellular vesicles contain selectively packaged, full-length mRNA.; Cell Rep, 43: 114061 |
|
GSE243611 |
| Ranzani, Marco et al. (2013) Lentiviral vector-based insertional mutagenesis identifies genes associated with liver cancer.; Nat Methods, 10: 155-61 |
|
GSE31409 |
| Rao, Chinthalapally V et al. (2018) Spontaneous development of Alzheimer's disease-associated brain pathology in a Shugoshin-1 mouse cohesinopathy model.; Aging Cell, [no vol.]: e12797 |
|
GSE115185 |
| Rao, Jie et al. (2023) A novel role for astrocytic fragmented mitochondria in regulating morphine addiction.; Brain Behav Immun, 113: 328-339 |
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GSE239387 |
| Rao, Mahadev et al. (2016) Mithramycin Depletes Specificity Protein 1 and Activates p53 to Mediate Senescence and Apoptosis of Malignant Pleural Mesothelioma Cells.; Clin Cancer Res, 22: 1197-210 |
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GSE64738.1 GSE64738.2 |
| Rao, Mishal et al. (2023) Aldose reductase inhibition decelerates optic nerve degeneration by alleviating retinal microglia activation.; Sci Rep, 13: 5592 |
|
GSE200233 |
| Rao, Vanitha Venkoba et al. (2026) Cranial placode differentiation defect in individuals born without a nose.; Stem Cell Reports, [no vol.]: 102890 |
|
GSE296453 |
| Rao, Vinay Kumar et al. (2019) Phosphorylation of Tet3 by cdk5 is critical for robust activation of BRN2 during neuronal differentiation.; Nucleic Acids Res, [no vol.]: [no pages] |
|
GSE130384 |
| Rao, Xi et al. (2019) Allele-specific expression and high-throughput reporter assay reveal functional genetic variants associated with alcohol use disorders.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE131470 |
| Rao, Zhiping et al. (2021) Molecular Mechanisms Underlying Ascl1-Mediated Astrocyte-to-Neuron Conversion.; Stem Cell Reports, 16: 534-547 |
|
GSE132674 |
| Rapanelli, Maximiliano et al. (2022) Targeting histone demethylase LSD1 for treatment of deficits in autism mouse models.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE193380 |
| Rapaport, Franck et al. (2013) Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data.; Genome Biol, 14: R95 |
|
GSE49712 |
| Rapin, Nicolas et al. (2014) Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients.; Blood, 123: 894-904 |
|
GSE42519 |
| Raponi, Mitch et al. (2007) Identification of molecular predictors of response in a study of tipifarnib treatment in relapsed and refractory acute myelogenous leukemia.; Clin Cancer Res, 13: 2254-60 |
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GSE5122 |
| Raponi, Mitch et al. (2008) A 2-gene classifier for predicting response to the farnesyltransferase inhibitor tipifarnib in acute myeloid leukemia.; Blood, 111: 2589-96 |
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GSE8970 |
| Rapp, Julian et al. (2024) Oncostatin M Reduces Pathological Neovascularization in the Retina Through Müller Cell Activation.; Invest Ophthalmol Vis Sci, 65: 22 |
|
GSE227350 |
| Rappoport, Nimrod et al. (2023) Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape.; Nat Commun, 14: 3844 |
|
GSE205117 |
| Rasa, Seyed Mohammad Mahdi et al. (2022) Inflammaging is driven by upregulation of innate immune receptors and systemic interferon signaling and is ameliorated by dietary restriction.; Cell Rep, 39: 111017 |
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GSE162802 |
| Rashi-Elkeles, Sharon et al. (2011) Transcriptional modulation induced by ionizing radiation: p53 remains a central player.; Mol Oncol, 5: 336-48 |
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GSE30240 |
| Rashkovan, Marissa et al. (2014) Miz-1 regulates translation of Trp53 via ribosomal protein L22 in cells undergoing V(D)J recombination.; Proc Natl Acad Sci U S A, 111: E5411-9 |
|
GSE57694 |
| Raskatov, Jevgenij A et al. (2012) Modulation of NF-?B-dependent gene transcription using programmable DNA minor groove binders.; Proc Natl Acad Sci U S A, 109: 1023-8 |
|
GSE34329 |
| Raskin, Leon et al. (2013) Transcriptome Profiling Identifies HMGA2 as a Biomarker of Melanoma Progression and Prognosis.; J Invest Dermatol, 133: 2585-92 |
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GSE15605 |
| Raskó, Tamás et al. (2022) A Novel Gene Controls a New Structure: PiggyBac Transposable Element-Derived 1, Unique to Mammals, Controls Mammal-Specific Neuronal Paraspeckles.; Mol Biol Evol, 39: [no pages] |
|
GSE213757 |
| Rasmussen, Angela L et al. (2012) Early transcriptional programming links progression to hepatitis C virus-induced severe liver disease in transplant patients.; Hepatology, 56: 17-27 |
|
GSE34798 |
| Rasmussen, Jay et al. (2021) An early proinflammatory transcriptional response to tau pathology is age-specific and foreshadows reduced tau burden.; Brain Pathol, [no vol.]: e13018 |
|
GSE169686 |
| Rasmussen, Mads Heilskov et al. (2016) miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells.; Nat Commun, 7: 12436 |
|
GSE83129 |
| Rasmussen, Mikkel A et al. (2014) Transient p53 suppression increases reprogramming of human fibroblasts without affecting apoptosis and DNA damage.; Stem Cell Reports, 3: 404-13 |
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GSE48665 |
| Rasool, Reyaz Ur et al. (2023) Loss of LCMT1 and biased protein phosphatase 2A heterotrimerization drive prostate cancer progression and therapy resistance.; Nat Commun, 14: 5253 |
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GSE205419.1 GSE205419.2 |
| Rasouli, Javad et al. (2021) IFN-β Acts on Monocytes to Ameliorate CNS Autoimmunity by Inhibiting Proinflammatory Cross-Talk Between Monocytes and Th Cells.; Front Immunol, 12: 679498 |
|
GSE169670 |
| Rastogi, Mohit et al. (2024) Integrative multi-omic analysis reveals conserved cell-projection deficits in human Down syndrome brains.; Neuron, 112: 2503-2523.e10 |
|
GSE221178 |
| Rath, Barbara H et al. (2013) Astrocytes enhance the invasion potential of glioblastoma stem-like cells.; PLoS One, 8: e54752 |
|
GSE37120 |
| Rath, Poonam et al. (2013) Genetic regulation of vesiculogenesis and immunomodulation in Mycobacterium tuberculosis.; Proc Natl Acad Sci U S A, 110: E4790-7 |
|
GSE50050 |
| Rath, Sneha et al. (2015) Human RNase L tunes gene expression by selectively destabilizing the microRNA-regulated transcriptome.; Proc Natl Acad Sci U S A, 112: 15916-21 |
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GSE75530 |
| Rathe, Susan K et al. (2025) Techniques for Validating CRISPR Changes Using RNA-Sequencing Data.; Genes (Basel), 16: [no pages] |
|
GSE100181 |
| Rathert, Philipp et al. (2015) Transcriptional plasticity promotes primary and acquired resistance to BET inhibition.; Nature, 525: 543-547 |
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GSE63782.2.2 |
| Rathi, Abhilasha V et al. (2010) Induction of interferon-stimulated genes by Simian virus 40 T antigens.; Virology, 406: 202-11 |
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GSE20620 |
| Rathore, Abhay P S et al. (2021) Immunological and Pathological Landscape of Dengue Serotypes 1-4 Infections in Immune-Competent Mice.; Front Immunol, 12: 681950 |
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GSE174806 GSE174805 |
| Ratnaparkhe, Manasi et al. (2018) Defective DNA damage repair leads to frequent catastrophic genomic events in murine and human tumors.; Nat Commun, 9: 4760 |
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GSE120344 |
| Rattner, Amir et al. (2005) The genomic response to retinal disease and injury: evidence for endothelin signaling from photoreceptors to glia.; J Neurosci, 25: 4540-9 |
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GSE10535 GSE10528 |
| Rattner, Amir et al. (2013) Endothelin-2 signaling in the neural retina promotes the endothelial tip cell state and inhibits angiogenesis.; Proc Natl Acad Sci U S A, 110: E3830-9 |
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GSE50059 |
| Rauch, Philipp J et al. (2012) Innate response activator B cells protect against microbial sepsis.; Science, 335: 597-601 |
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GSE32372 |
| Raue, Ulrika et al. (2012) Transcriptome signature of resistance exercise adaptations: mixed muscle and fiber type specific profiles in young and old adults.; J Appl Physiol (1985), 112: 1625-36 |
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GSE25941 GSE28422 GSE28392 |
| Raus, Anthony M et al. (2023) Early-life exercise primes the murine neural epigenome to facilitate gene expression and hippocampal memory consolidation.; Commun Biol, 6: 18 |
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GSE208714 |
| Raveh, Avi et al. (2013) Discovery of potent broad spectrum antivirals derived from marine actinobacteria.; PLoS One, 8: e82318 |
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GSE44541 |
| Raveney, Ben J E et al. (2015) Eomesodermin-expressing T-helper cells are essential for chronic neuroinflammation.; Nat Commun, 6: 8437 |
|
GSE72301 |
| Ravi, Dashnamoorthy et al. (2016) Proteasomal Inhibition by Ixazomib Induces CHK1 and MYC-Dependent Cell Death in T-cell and Hodgkin Lymphoma.; Cancer Res, 76: 3319-31 |
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GSE66415 GSE66417 |
| Ravi, Dashnamoorthy et al. (2021) Oncogenic Integration of Nucleotide MetabolismviaFatty Acid Synthase in Non-Hodgkin Lymphoma.; Front Oncol, 11: 725137 |
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GSE102760 GSE102764 |
| Raviv, Shaul et al. (2014) PAX6 regulates melanogenesis in the retinal pigmented epithelium through feed-forward regulatory interactions with MITF.; PLoS Genet, 10: e1004360 |
|
GSE56548 |
| Ravoet, Marie et al. (2009) Molecular profiling of CD3-CD4+ T cells from patients with the lymphocytic variant of hypereosinophilic syndrome reveals targeting of growth control pathways.; Blood, 114: 2969-83 |
|
GSE12079 |
| Rawat, Chitra et al. (2020) Peripheral blood gene expression signatures associated with epilepsy and its etiologic classification.; Genomics, 112: 218-224 |
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GSE143272 |
| Rawat, Rohit Singh et al. (2022) Early life stressful experiences escalate aggressive behavior in adulthood via changes in transthyretin expression and function.; Elife, 11: [no pages] |
|
GSE199844 |
| Rawji, Khalil S et al. (2020) Niacin-mediated rejuvenation of macrophage/microglia enhances remyelination of the aging central nervous system.; Acta Neuropathol, 139: 893-909 |
|
GSE129000 |
| Ray, M et al. (2007) Expression profiling of human donor lungs to understand primary graft dysfunction after lung transplantation.; Am J Transplant, 7: 2396-405 |
|
GSE8021 |
| Ray, Monika et al. (2012) Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks.; BMC Genomics, 13: 190 |
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GSE29344 |
| Ray, Sandipan et al. (2020) Circadian rhythms in the absence of the clock geneBmal1.; Science, 367: 800-806 |
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GSE111696.1 GSE111696.2 GSE134333.1 GSE111696.3 GSE134333.2 |
| Ray, Surjyendu et al. (2015) An Examination of Dynamic Gene Expression Changes in the Mouse Brain During Pregnancy and the Postpartum Period.; G3 (Bethesda), 6: 221-33 |
|
GSE70732 |
| Rayan, Nirmala Arul et al. (2022) Integrative multi-omics landscape of fluoxetine action across 27 brain regions reveals global increase in energy metabolism and region-specific chromatin remodelling.; Mol Psychiatry, 27: 4510-4525 |
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GSE194289.1 |
| Rayan, Nirmala Arul et al. (2024) Shared and unique transcriptomic signatures of antidepressant and probiotics action in the mammalian brain.; Mol Psychiatry, 29: 3653-3668 |
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GSE222756 |
| Raymond, Frederic et al. (2010) Comparative gene expression profiling between human cultured myotubes and skeletal muscle tissue.; BMC Genomics, 11: 125 |
|
GSE17503 |
| Raymond, Frédéric et al. (2012) Consequences of exchanging carbohydrates for proteins in the cholesterol metabolism of mice fed a high-fat diet.; PLoS One, 7: e49058 |
|
GSE20260 |
| Raynor, Jana L et al. (2024) CRISPR screens unveil nutrient-dependent lysosomal and mitochondrial nodes impacting intestinal tissue-resident memory CD8+T cell formation.; Immunity, 57: 2597-2614.e13 |
|
GSE231342 |
| Rayon, Teresa et al. (2020) Species-specific pace of development is associated with differences in protein stability.; Science, 369: [no pages] |
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GSE140748 GSE140747 |
| Rea, Jessica et al. (2021) Identification and Functional Characterization of Novel MYC-Regulated Long Noncoding RNAs in Group 3 Medulloblastoma.; Cancers (Basel), 13: [no pages] |
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GSE171117 |
| Read, Renee D (2018) Pvr receptor tyrosine kinase signaling promotes post-embryonic morphogenesis, and survival of glia and neural progenitor cells inDrosophila.; Development, 145: [no pages] |
|
GSE122679 |
| Read, Tracy-Ann et al. (2009) Identification of CD15 as a marker for tumor-propagating cells in a mouse model of medulloblastoma.; Cancer Cell, 15: 135-47 |
|
GSE12430 |
| Readhead, Ben et al. (2018) Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.; Neuron, 99: 64-82.e7 |
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GSE5281 GSE9770 |
| Readhead, Benjamin et al. (2018) Expression-based drug screening of neural progenitor cells from individuals with schizophrenia.; Nat Commun, 9: 4412 |
|
GSE119290 |
| Real, Pedro J et al. (2009) Gamma-secretase inhibitors reverse glucocorticoid resistance in T cell acute lymphoblastic leukemia.; Nat Med, 15: 50-8 |
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GSE11184 GSE7067 |
| Realegeno, Susan et al. (2016) S100A12 Is Part of the Antimicrobial Network against Mycobacterium leprae in Human Macrophages.; PLoS Pathog, 12: e1005705 |
|
GSE82227 |
| Realini, Giulia et al. (2025) N-acetyl-l-cysteine ethyl ester (NACET) induces the transcription factor NRF2 and prevents retinal aging and diabetic retinopathy.; Redox Biol, 88: 103914 |
|
GSE299879 |
| Rebeaud, J et al. (2025) Gut-derived metabolites drive Th17 cell pathogenicity in multiple sclerosis.; Cell Rep, 44: 116326 |
|
GSE282316 |
| Recinos, Adrian et al. (2004) Liver gene expression associated with diet and lesion development in atherosclerosis-prone mice: induction of components of alternative complement pathway.; Physiol Genomics, 19: 131-42 |
|
GSE363 |
| Recouvreux, Maria Victoria et al. (2020) Glutamine depletion regulates Slug to promote EMT and metastasis in pancreatic cancer.; J Exp Med, 217: [no pages] |
|
GSE150874 |
| Recuero, Enrique et al. (2023) Novel Mouse Cell Lines and In Vivo Models for Human High-Grade Neuroendocrine Lung Carcinoma, Small Cell Lung Carcinoma (SCLC), and Large Cell Neuroendocrine Carcinoma (LCNEC).; Int J Mol Sci, 24: [no pages] |
|
GSE242422 |
| Reda, Anas et al. (2024) Role of the histone variant H2A.Z.1 in memory, transcription, and alternative splicing is mediated by lysine modification.; Neuropsychopharmacology, [no vol.]: [no pages] |
|
GSE242179 |
| Reddington, James P et al. (2013) Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes.; Genome Biol, 14: R25 |
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GSE44277 GSE44276 |