List of all 17,763 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Sun, Wenjing et al. (2025) Histone marks enable formation of immiscible phase-separated chromatin compartments.; Cell Rep, 44: 116003 |
|
GSE241262 |
| Sun, Wuping et al. (2020) A Transcriptomic Analysis of Neuropathic Pain in Rat Dorsal Root Ganglia Following Peripheral Nerve Injury.; Neuromolecular Med, 22: 250-263 |
|
GSE117526 |
| Sun, Xinxin et al. (2015) Transcription factor Sp4 regulates expression of nervous wreck 2 to control NMDAR1 levels and dendrite patterning.; Dev Neurobiol, 75: 93-108 |
|
GSE53061 |
| Sun, Xue-Lian et al. (2023) Stem cell competition driven by the Axin2-p53 axis controls brain size during murine development.; Dev Cell, 58: 744-759.e11 |
|
GSE203163.1 |
| Sun, Xueqin et al. (2023) BRD8 maintains glioblastoma by epigenetic reprogramming of the p53 network.; Nature, 613: 195-202 |
|
GSE158550 |
| Sun, Xuezheng et al. (2013) Relationship of mammographic density and gene expression: analysis of normal breast tissue surrounding breast cancer.; Clin Cancer Res, 19: 4972-82 |
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GSE49175 |
| Sun, Xuxu et al. (2017) Arid1a Has Context-Dependent Oncogenic and Tumor Suppressor Functions in Liver Cancer.; Cancer Cell, 32: 574-589.e6 |
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GSE95537 |
| Sun, Yan et al. (2021) Loss of ATF4 leads to functional aging-like attrition of adult hematopoietic stem cells.; Sci Adv, 7: eabj6877 |
|
GSE132682 |
| Sun, Yan et al. (2022) S-palmitoylation of PCSK9 induces sorafenib resistance in liver cancer by activating the PI3K/AKT pathway.; Cell Rep, 40: 111194 |
|
GSE183113 |
| Sun, Yan et al. (2023) MST2 methylation by PRMT5 inhibits Hippo signaling and promotes pancreatic cancer progression.; EMBO J, 42: e114558 |
|
GSE241402 |
| Sun, Ye et al. (2017) Inflammatory signals from photoreceptor modulate pathological retinal angiogenesis via c-Fos.; J Exp Med, 214: 1753-1767 |
|
GSE78831 |
| Sun, Yi et al. (2022) SIRT1 activation attenuates microglia-mediated synaptic engulfment in postoperative cognitive dysfunction.; Front Aging Neurosci, 14: 943842 |
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GSE215410 |
| Sun, Yidan et al. (2023) MSL2 ensures biallelic gene expression in mammals.; Nature, 624: 173-181 |
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GSE227741 GSE231588 |
| Sun, Yijun et al. (2009) Optimizing molecular signatures for predicting prostate cancer recurrence.; Prostate, 69: 1119-27 |
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GSE25136 |
| Sun, Ying et al. (2008) Temporal gene expression profiling reveals CEBPD as a candidate regulator of brain disease in prosaposin deficient mice.; BMC Neurosci, 9: 76 |
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GSE8307 |
| Sun, Ying et al. (2023) IFN-γIs Protective in Cytokine Release Syndrome-associated Extrapulmonary Acute Lung Injury.; Am J Respir Cell Mol Biol, 68: 75-89 |
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GSE208651 |
| Sun, Yonglian et al. (2014) PILR? negatively regulates mouse inflammatory arthritis.; J Immunol, 193: 860-70 |
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GSE48780 |
| Sun, Yu et al. (2020) Lmo4-resistin signaling contributes to adipose tissue-liver crosstalk upon weight cycling.; FASEB J, 34: 4732-4748 |
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GSE134336 |
| Sun, Yue et al. (2025) LncRNA GAS5 Regulates Myometrial Cell Contractions in an m6A-Dependent Manner.; Function (Oxf), 6: [no pages] |
|
GSE236038 |
| Sun, Zhao et al. (2024) Modeling late-onset Alzheimer's disease neuropathology via direct neuronal reprogramming.; Science, 385: adl2992 |
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GSE267613 GSE253174 GSE252932 |
| Sun, Zhao-Wei et al. (2025) Rutin ameliorates stress-induced blood‒brain barrier dysfunction and cognitive decline via the endothelial HDAC1‒Claudin-5 axis.; Fluids Barriers CNS, 22: 35 |
|
GSE288810 |
| Sun, Zhen-Cheng et al. (2022) The mechanism by which hyperbaric oxygen treatment alleviates spinal cord injury: genome-wide transcriptome analysis.; Neural Regen Res, 17: 2737-2742 |
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GSE185301 |
| Sun, Zhifu et al. (2011) Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing.; PLoS One, 6: e17490 |
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GSE27003 |
| Sun, Zhixiong et al. (2025) Genomic and Transcriptomic Signatures of SETD1A Disruption in Human Excitatory Neuron Development and Psychiatric Disease Risk.; bioRxiv, [no vol.]: [no pages] |
|
GSE237165 |
| Sun, Zhun et al. (2023) B cell-derived IL-10 promotes the resolution of lipopolysaccharide-induced acute lung injury.; Cell Death Dis, 14: 418 |
|
GSE236391 |
| Sun, Ziyu et al. (2025) Cooperation of TRADD- and RIPK1-dependent cell death pathways in maintaining intestinal homeostasis.; Nat Commun, 16: 1890 |
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GSE279702 GSE279700 GSE279034 |
| Sunadome, Kazunori et al. (2011) ERK5 regulates muscle cell fusion through Klf transcription factors.; Dev Cell, 20: 192-205 |
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GSE25827 |
| Sundaram, Venkat Krishnan et al. (2023) Adipo-glial signaling mediates metabolic adaptation in peripheral nerve regeneration.; Cell Metab, 35: 2136-2152.e9 |
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GSE244328 |
| Sundararajan, Vignesh et al. (2020) SNAI1-Driven Sequential EMT Changes Attributed by Selective Chromatin Enrichment of RAD21 and GRHL2.; Cancers (Basel), 12: [no pages] |
|
GSE145553 |
| Sunderland, Ashley et al. (2023) Biglycan and reduced glycolysis are associated with breast cancer cell dormancy in the brain.; Front Oncol, 13: 1191980 |
|
GSE220017 |
| Sundermeier, Thomas R et al. (2014) DICER1 is essential for survival of postmitotic rod photoreceptor cells in mice.; FASEB J, 28: 3780-91 |
|
GSE55377 |
| Sundstrom, Jonathan et al. (2024) Herpes Simplex Virus 1 Infection of Human Brain Organoids and Pancreatic Stem Cell-Islets Drives Organoid-Specific Transcripts Associated with Alzheimer's Disease and Autoimmune Diseases.; Cells, 13: [no pages] |
|
GSE272361 |
| Sung, Chang Ohk et al. (2011) Genomic profiling combined with gene expression profiling in primary central nervous system lymphoma.; Blood, 117: 1291-300 |
|
GSE25299.2 |
| Sung, Hsu-Min et al. (2023) Stress-induced nuclear speckle reorganization is linked to activation of immediate early gene splicing.; J Cell Biol, 222: [no pages] |
|
GSE231519 GSE231520 |
| Sung, Li-Ying et al. (2014) Telomere elongation and naive pluripotent stem cells achieved from telomerase haplo-insufficient cells by somatic cell nuclear transfer.; Cell Rep, 9: 1603-1609 |
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GSE62692 |
| Sunil, Hari Shankar et al. (2025) TMPRSS11B promotes an acidified microenvironment and immune suppression in squamous lung cancer.; EMBO Rep, 26: 6346-6379 |
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GSE292085 |
| Sunshine, Hannah L et al. (2024) Endothelial Jagged1 levels and distribution are post-transcriptionally controlled by ZFP36 decay proteins.; Cell Rep, 43: 113627 |
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GSE235462 |
| Suntsova, Maria et al. (2013) Human-specific endogenous retroviral insert serves as an enhancer for the schizophrenia-linked gene PRODH.; Proc Natl Acad Sci U S A, 110: 19472-7 |
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GSE43773 |
| Suo, Zizheng et al. (2024) Aged hippocampal single-cell atlas screening unveils disrupted neuroglial system in postoperative cognitive impairment.; Aging Cell, [no vol.]: e14406 |
|
GSE267933 |
| Suppiah, Suganth et al. (2023) Multiplatform molecular profiling uncovers two subgroups of malignant peripheral nerve sheath tumors with distinct therapeutic vulnerabilities.; Nat Commun, 14: 2696 |
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GSE207400 |
| Sur, Surojit et al. (2009) A panel of isogenic human cancer cells suggests a therapeutic approach for cancers with inactivated p53.; Proc Natl Acad Sci U S A, 106: 3964-9 |
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GSE13886 |
| Suram, Saritha et al. (2010) Pathways regulating cytosolic phospholipase A2 activation and eicosanoid production in macrophages by Candida albicans.; J Biol Chem, 285: 30676-85 |
|
GSE46533 |
| Sure, Florian et al. (2024) Transmembrane Serine Protease 2 and Proteolytic Activation of the Epithelial Sodium Channel in Mouse Kidney.; J Am Soc Nephrol, [no vol.]: [no pages] |
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GSE274304 GSE274305 GSE274306 |
| Suresh, Rahul et al. (2014) Transcriptome from circulating cells suggests dysregulated pathways associated with long-term recurrent events following first-time myocardial infarction.; J Mol Cell Cardiol, 74C: 13-21 |
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GSE48060 |
| Suresh, Varun et al. (2023) PRDM16 co-operates with LHX2 to shape the human brain.; bioRxiv, [no vol.]: [no pages] |
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GSE239855 |
| Suri, Deepika et al. (2014) Early stress evokes temporally distinct consequences on the hippocampal transcriptome, anxiety and cognitive behaviour.; Int J Neuropsychopharmacol, 17: 289-301 |
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GSE29414 GSE29412 |
| Suriben, Rowena et al. (2015) ?-Cell Insulin Secretion Requires the Ubiquitin Ligase COP1.; Cell, 163: 1457-67 |
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GSE70788 |
| Surles-Zeigler, Monique C et al. (2018) Transcriptomic analysis of neuregulin-1 regulated genes following ischemic stroke by computational identification of promoter binding sites: A role for the ETS-1 transcription factor.; PLoS One, 13: e0197092 |
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GSE103661 GSE212732 |
| Surrey, Verena et al. (2018) Impaired Local Translation of β-actin mRNA in Ighmbp2-Deficient Motoneurons: Implications for Spinal Muscular Atrophy with respiratory Distress (SMARD1).; Neuroscience, 386: 24-40 |
|
GSE111224 |
| Susanto, Teodorus Theo et al. (2024) RAPIDASH: Tag-free enrichment of ribosome-associated proteins reveals composition dynamics in embryonic tissue, cancer cells, and macrophages.; Mol Cell, 84: 3545-3563.e25 |
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GSE274188 GSE274178 |
| Susco, Sara G et al. (2022) Molecular convergence between Down syndrome and fragile X syndrome identified using human pluripotent stem cell models.; Cell Rep, 40: 111312 |
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GSE144857 |
| Suslov, Oleg et al. (2015) Application of an RNA amplification method for reliable single-cell transcriptome analysis.; Biotechniques, 59: 137-48 |
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GSE55137 |
| Suspène, Rodolphe et al. (2024) Disruption of deoxyribonucleotide triphosphate biosynthesis leads to RAS proto-oncogene activation and perturbation of mitochondrial metabolism.; J Biol Chem, 301: 108117 |
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GSE261895 |
| Suter, Thomas et al. (2025) Ligand-specific regulation of a binary enhancer code dictating cellular senescence.; Proc Natl Acad Sci U S A, 122: e2506321122 |
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GSE146578 |
| Suthapot, Praewa et al. (2022) The RNA helicases DDX5 and DDX17 facilitate neural differentiation of human pluripotent stem cells NTERA2.; Life Sci, 291: 120298 |
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GSE173292 |
| Suthar, Mehul S et al. (2013) A systems biology approach reveals that tissue tropism to West Nile virus is regulated by antiviral genes and innate immune cellular processes.; PLoS Pathog, 9: e1003168 |
|
GSE39259 |
| Sutherland, Allison et al. (2011) Development and validation of a novel molecular biomarker diagnostic test for the early detection of sepsis.; Crit Care, 15: R149 |
|
GSE28750 |
| Sutherland, Greg T et al. (2014) Comorbidities, confounders, and the white matter transcriptome in chronic alcoholism.; Alcohol Clin Exp Res, 38: 994-1001 |
|
GSE53808 |
| Sutinen, Päivi et al. (2014) SUMOylation modulates the transcriptional activity of androgen receptor in a target gene and pathway selective manner.; Nucleic Acids Res, 42: 8310-9 |
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GSE54137 GSE54104 |
| Sutton, Gavin J et al. (2022) Comprehensive evaluation of deconvolution methods for human brain gene expression.; Nat Commun, 13: 1358 |
|
GSE175772 |
| Suzich, Jon B et al. (2021) PML-NB-dependent type I interferon memory results in a restricted form of HSV latency.; EMBO Rep, [no vol.]: e52547 |
|
GSE166738 |
| Suzuki, Hitoshi et al. (2011) Comprehensive analysis of alternative splicing and functionality in neuronal differentiation of P19 cells.; PLoS One, 6: e16880 |
|
GSE23710 |
| Suzuki, Jun et al. (2023) Fatty acid binding protein type 7 deficiency preserves auditory function in noise-exposed mice.; Sci Rep, 13: 21494 |
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GSE241529 |
| Suzuki, Katsushi et al. (2020) Bach1 promotes muscle regeneration through repressing Smad-mediated inhibition of myoblast differentiation.; PLoS One, 15: e0236781 |
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GSE155097 |
| Suzuki, Keiichiro et al. (2010) The sensing of environmental stimuli by follicular dendritic cells promotes immunoglobulin A generation in the gut.; Immunity, 33: 71-83 |
|
GSE19401 |
| Suzuki, Ryo et al. (2010) Diabetes and insulin in regulation of brain cholesterol metabolism.; Cell Metab, 12: 567-79 |
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GSE62013 |
| Suzuki, Takafumi et al. (2020) Nrf2 contributes to the weight gain of mice during space travel.; Commun Biol, 3: 496 |
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GSE152382 |
| Suzuki, Tamami et al. (2022) Manipulating histone acetylation leads to antitumor effects in hemangiosarcoma cells.; Vet Comp Oncol, 20: 805-816 |
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GSE200106 |
| Suzuki, Toru et al. (2016) Mice produced by mitotic reprogramming of sperm injected into haploid parthenogenotes.; Nat Commun, 7: 12676 |
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GSE60595 |
| Suzzi, Stefano et al. (2023) N-acetylneuraminic acid links immune exhaustion and accelerated memory deficit in diet-induced obese Alzheimer's disease mouse model.; Nat Commun, 14: 1293 |
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GSE198144 GSE198835.2 |
| Sveen, Anita et al. (2012) ColoGuidePro: a prognostic 7-gene expression signature for stage III colorectal cancer patients.; Clin Cancer Res, 18: 6001-10 |
|
GSE30378 |
| Sveidahl Johansen, Olivia et al. (2021) Lipolysis drives expression of the constitutively active receptor GPR3 to induce adipose thermogenesis.; Cell, 184: 3502-3518.e33 |
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GSE173386.1 GSE173404 GSE173388 GSE173389 GSE173386.2 |
| Svoboda, Devon S et al. (2019) Human iPSC-derived microglia assume a primary microglia-like state after transplantation into the neonatal mouse brain.; Proc Natl Acad Sci U S A, 116: 25293-25303 |
|
GSE139192 |
| Svoboda, Laurie K et al. (2014) Overexpression of HOX genes is prevalent in Ewing sarcoma and is associated with altered epigenetic regulation of developmental transcription programs.; Epigenetics, 9: 1613-25 |
|
GSE68898 |
| Swahari, Vijay et al. (2021) MicroRNA-29 is an essential regulator of brain maturation through regulation of CH methylation.; Cell Rep, 35: 108946 |
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GSE140163.2 GSE140163.1 |
| Swahari, Vijay et al. (2024) miR-29 is an important driver of aging-related phenotypes.; Commun Biol, 7: 1055 |
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GSE107763 |
| Swales, Nathalie et al. (2012) Plasticity of adult human pancreatic duct cells by neurogenin3-mediated reprogramming.; PLoS One, 7: e37055 |
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GSE30802 |
| Swaminathan, Jyothishmathi et al. (2022) Cross-Talk Between Histone Methyltransferases and Demethylases Regulate REST Transcription During Neurogenesis.; Front Oncol, 12: 855167 |
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GSE196548 |
| Swaminathan, Srividya et al. (2013) BACH2 mediates negative selection and p53-dependent tumor suppression at the pre-B cell receptor checkpoint.; Nat Med, 19: 1014-22 |
|
GSE41042 |
| Swamy, Mahima et al. (2015) Intestinal intraepithelial lymphocyte activation promotes innate antiviral resistance.; Nat Commun, 6: 7090 |
|
GSE63364 |
| Šušnjar, Urša et al. (2022) Cell environment shapes TDP-43 function with implications in neuronal and muscle disease.; Commun Biol, 5: 314 |
|
GSE171714 |
| Šuštić, Tonći et al. (2020) RUNX2/CBFB modulates the response to MEK inhibitors through activation of receptor tyrosine kinases in KRAS-mutant colorectal cancer.; Transl Oncol, 13: 201-211 |
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GSE139169 |