List of all 17,756 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Swarup, Vivek et al. (2019) Identification of evolutionarily conserved gene networks mediating neurodegenerative dementia.; Nat Med, 25: 152-164 |
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GSE89580 GSE89979 GSE90693 |
| Sweet-Cordero, Alejandro et al. (2005) An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis.; Nat Genet, 37: 48-55 |
|
GSE49200 |
| Sweetat, Sahar et al. (2022) Improved neuron protection following cortical injury in the absence of Semaphorin4B.; Front Cell Neurosci, 16: 1076281 |
|
GSE230069 |
| Sweha, Stefan R et al. (2021) Epigenetically defined therapeutic targeting in H3.3G34R/V high-grade gliomas.; Sci Transl Med, 13: eabf7860 |
|
GSE161288 |
| Swierzy, Izabela J et al. (2017) Divergent co-transcriptomes of different host cells infected with Toxoplasma gondii reveal cell type-specific host-parasite interactions.; Sci Rep, 7: 7229 |
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GSE94595 |
| Swift, Steven M et al. (2008) Differential coupling of Arg- and Gly389 polymorphic forms of the beta1-adrenergic receptor leads to pathogenic cardiac gene regulatory programs.; Physiol Genomics, 35: 123-31 |
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GSE11887 |
| Swilley, Cody et al. (2023) Sex-Linked Growth Disorder and Aberrant Pituitary Gene Expression in Nestin-Cre-MediatedEgr1Conditional Knockout Mice.; Biology (Basel), 12: [no pages] |
|
GSE232396 GSE217927 |
| Swindell, William R et al. (2011) Genome-wide expression profiling of five mouse models identifies similarities and differences with human psoriasis.; PLoS One, 6: e18266 |
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GSE27628 |
| Swindell, William R et al. (2012) Heterogeneity of inflammatory and cytokine networks in chronic plaque psoriasis.; PLoS One, 7: e34594 |
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GSE36287 |
| Swindell, William R et al. (2012) Meta-profiles of gene expression during aging: limited similarities between mouse and human and an unexpectedly decreased inflammatory signature.; PLoS One, 7: e33204 |
|
GSE35322 |
| Swindell, William R et al. (2018) GM604 regulates developmental neurogenesis pathways and the expression of genes associated with amyotrophic lateral sclerosis.; Transl Neurodegener, 7: 30 |
|
GSE114510 |
| Swindell, William R et al. (2022) Transcriptomic Analysis of Fumarate Compounds Identifies Unique Effects of Isosorbide Di-(Methyl Fumarate) on NRF2, NF-kappaB and IRF1 Pathway Genes.; Pharmaceuticals (Basel), 15: [no pages] |
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GSE200539 |
| Swindell, William R et al. (2023) Bakuchiol and Ethyl (Linoleate/Oleate) Synergistically Modulate Endocannabinoid Tone in Keratinocytes and Repress Inflammatory Pathway mRNAs.; JID Innov, 3: 100178 |
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GSE216614 |
| Swirski, Filip K et al. (2009) Identification of splenic reservoir monocytes and their deployment to inflammatory sites.; Science, 325: 612-6 |
|
GSE14850 |
| Swisa, Avital et al. (2017) PAX6 maintains β cell identity by repressing genes of alternative islet cell types.; J Clin Invest, 127: 230-243 |
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GSE87530.1 |
| Syangtan, Deepsing et al. (2024) Heparan sulfate regulates the fate decisions of human pluripotent stem cells.; Stem Cell Reports, [no vol.]: 102384 |
|
GSE272332 |
| Syc-Mazurek, Stephanie B et al. (2022) Transcriptional control of retinal ganglion cell death after axonal injury.; Cell Death Dis, 13: 244 |
|
GSE168789 |
| Sykora, Peter et al. (2015) DNA polymerase ? deficiency leads to neurodegeneration and exacerbates Alzheimer disease phenotypes.; Nucleic Acids Res, 43: 943-59 |
|
GSE60911 |
| Symeonides, Christos et al. (2024) Male autism spectrum disorder is linked to brain aromatase disruption by prenatal BPA in multimodal investigations and 10HDA ameliorates the related mouse phenotype.; Nat Commun, 15: 6367 |
|
GSE266400 GSE266401 |
| Symmans, W Fraser et al. (2010) Genomic index of sensitivity to endocrine therapy for breast cancer.; J Clin Oncol, 28: 4111-9 |
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GSE17705 |
| Symula, Derek J et al. (2004) Functional annotation of mouse mutations in embryonic stem cells by use of expression profiling.; Mamm Genome, 15: 1-13 |
|
GSE614 |
| Szabo, R et al. (2016) Passenger mutations and aberrant gene expression in congenic tissue plasminogen activator-deficient mouse strains.; J Thromb Haemost, 14: 1618-28 |
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GSE76093 |
| Szabolcsi, Viktoria et al. (2017) Parvalbumin-Neurons of the Ventrolateral Hypothalamic Parvafox Nucleus Receive a Glycinergic Input: A Gene-Microarray Study.; Front Mol Neurosci, 10: 8 |
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GSE92955 |
| Szabova, Ludmila et al. (2012) Perturbation of Rb, p53, and Brca1 or Brca2 cooperate in inducing metastatic serous epithelial ovarian cancer.; Cancer Res, 72: 4141-53 |
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GSE46169 |
| Szabova, Ludmila et al. (2014) Pathway-specific engineered mouse allograft models functionally recapitulate human serous epithelial ovarian cancer.; PLoS One, 9: e95649 |
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GSE51927 |
| Szalanczy, Alexandria M et al. (2023) Changes in environmental stress over COVID-19 pandemic likely contributed to failure to replicate adiposity phenotype associated withKrtcap3.; Physiol Genomics, 55: 452-467 |
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GSE236873 |
| Szanto, Attila et al. (2010) STAT6 transcription factor is a facilitator of the nuclear receptor PPAR?-regulated gene expression in macrophages and dendritic cells.; Immunity, 33: 699-712 |
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GSE16385 GSE25088 GSE25123 |
| Szasz, Theodora et al. (2009) Differential expression of pancreatitis-associated protein and thrombospondins in arterial versus venous tissues.; J Vasc Res, 46: 551-560 |
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GSE12255 |
| Szathmari, Alexandru et al. (2013) Molecular characterization of circumventricular organs and third ventricle ependyma in the rat: potential markers for periventricular tumors.; Neuropathology, 33: 17-29 |
|
GSE35089 |
| Szczepaniak, Piotr et al. (2022) Breast cancer chemotherapy induces vascular dysfunction and hypertension through a NOX4-dependent mechanism.; J Clin Invest, 132: [no pages] |
|
GSE202682 |
| Szczepanski, Aileen Patricia et al. (2020) ASXL3 bridges BRD4 to BAP1 complex and governs enhancer activity in small cell lung cancer.; Genome Med, 12: 63 |
|
GSE145028.2 |
| Szczepanski, Aileen Patricia et al. (2022) POU2AF2/C11orf53 functions as a coactivator of POU2F3 by maintaining chromatin accessibility and enhancer activity.; Sci Adv, 8: eabq2403 |
|
GSE197426 |
| Szeky, Balazs et al. (2024) Efficient derivation of functional astrocytes from human induced pluripotent stem cells (hiPSCs).; PLoS One, 19: e0313514 |
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GSE253372 |
| Szeto, Aydan C H et al. (2024) Mef2d potentiates type-2 immune responses and allergic lung inflammation.; Science, 384: eadl0370 |
|
GSE242029 |
| Szigety, Katherine M et al. (2020) HDAC3 ensures stepwise epidermal stratification via NCoR/SMRT-reliant mechanisms independent of its histone deacetylase activity.; Genes Dev, 34: 973-988 |
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GSE137233 |
| Sziraki, Andras et al. (2023) A global view of aging and Alzheimer's pathogenesis-associated cell population dynamics and molecular signatures in human and mouse brains.; Nat Genet, 55: 2104-2116 |
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GSE244505 |
| Szołtysek, Katarzyna et al. (2018) RRAD, IL4I1, CDKN1A, and SERPINE1 genes are potentially co-regulated by NF-κB and p53 transcription factors in cells exposed to high doses of ionizing radiation.; BMC Genomics, 19: 813 |
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GSE110762 |
| Szpara, Moriah L et al. (2007) Analysis of gene expression during neurite outgrowth and regeneration.; BMC Neurosci, 8: 100 |
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GSE9740 GSE9738 GSE9739 |
| Sztainberg, Yehezkel et al. (2015) Reversal of phenotypes in MECP2 duplication mice using genetic rescue or antisense oligonucleotides.; Nature, 528: 123-6 |
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GSE71229 GSE71234 GSE71233 |
| Szuchet, Sara et al. (2011) The genetic signature of perineuronal oligodendrocytes reveals their unique phenotype.; Eur J Neurosci, 34: 1906-22 |
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GSE11277 |
| Szulwach, Keith E et al. (2011) 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging.; Nat Neurosci, 14: 1607-16 |
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GSE32187 |
| Szulzewsky, Frank et al. (2020) Comparison of tumor-associated YAP1 fusions identifies a recurrent set of functions critical for oncogenesis.; Genes Dev, 34: 1051-1064 |
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GSE137038 |
| Szwarc, Maria M et al. (2018) Human endometrial stromal cell decidualization requires transcriptional reprogramming by PLZF.; Biol Reprod, 98: 15-27 |
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GSE112362 |
| Szwarc, Maria M et al. (2018) Retinoid signaling controlled by SRC-2 in decidualization revealed by transcriptomics.; Reproduction, 156: 387-395 |
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GSE121584 |
| Szymaniak, Aleksander D et al. (2017) The Hippo pathway effector YAP is an essential regulator of ductal progenitor patterning in the mouse submandibular gland.; Elife, 6: [no pages] |
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GSE90480 |
| Szymczak, Florian et al. (2022) ADAR1-dependent editing regulates human β cell transcriptome diversity during inflammation.; Front Endocrinol (Lausanne), 13: 1058345 |
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GSE214851 |
| Széles, Lajos et al. (2009) 1,25-dihydroxyvitamin D3 is an autonomous regulator of the transcriptional changes leading to a tolerogenic dendritic cell phenotype.; J Immunol, 182: 2074-83 |
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GSE13762 |
| Széles, Lajos et al. (2010) Research resource: transcriptome profiling of genes regulated by RXR and its permissive and nonpermissive partners in differentiating monocyte-derived dendritic cells.; Mol Endocrinol, 24: 2218-31 |
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GSE23618 GSE23073 |
| Sønder, Søren Ulrik et al. (2011) IL-17-induced NF-kappaB activation via CIKS/Act1: physiologic significance and signaling mechanisms.; J Biol Chem, 286: 12881-90 |
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GSE24873 |
| T?rlungeanu, Dora C et al. (2016) Impaired Amino Acid Transport at the Blood Brain Barrier Is a Cause of Autism Spectrum Disorder.; Cell, 167: 1481-1494.e18 |
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GSE87808 |
| Tabach, Yuval et al. (2011) Amplification of the 20q chromosomal arm occurs early in tumorigenic transformation and may initiate cancer.; PLoS One, 6: e14632 |
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GSE23038 |
| Tabansky, Inna et al. (2018) Molecular profiling of reticular gigantocellularis neurons indicates that eNOS modulates environmentally dependent levels of arousal.; Proc Natl Acad Sci U S A, 115: E6900-E6909 |
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GSE115526 |
| Tabari, Denna et al. (2020) Impact of Zika Virus Infection on Human Neural Stem Cell MicroRNA Signatures.; Viruses, 12: [no pages] |
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GSE157530 |
| Tabata, Sho et al. (2023) L-2hydroxyglutaric acid rewires amino acid metabolism in colorectal cancer via the mTOR-ATF4 axis.; Oncogene, 42: 1294-1307 |
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GSE210167 |
| Tabchy, Adel et al. (2010) Evaluation of a 30-gene paclitaxel, fluorouracil, doxorubicin, and cyclophosphamide chemotherapy response predictor in a multicenter randomized trial in breast cancer.; Clin Cancer Res, 16: 5351-61 |
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GSE20271 |
| Tabe, Yoko et al. (2015) Ribosomal Biogenesis and Translational Flux Inhibition by the Selective Inhibitor of Nuclear Export (SINE) XPO1 Antagonist KPT-185.; PLoS One, 10: e0137210 |
|
GSE70479 |
| Tabel, Mona et al. (2022) Genetic targeting or pharmacological inhibition of galectin-3 dampens microglia reactivity and delays retinal degeneration.; J Neuroinflammation, 19: 229 |
|
GSE211119 |
| Tabernero, Maria Dolores et al. (2009) Gene expression profiles of meningiomas are associated with tumor cytogenetics and patient outcome.; Brain Pathol, 19: 409-20 |
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GSE43290 |
| Tabet, Fatiha et al. (2014) HDL-transferred microRNA-223 regulates ICAM-1 expression in endothelial cells.; Nat Commun, 5: 3292 |
|
GSE53201 |
| Tabibiazar, Raymond et al. (2005) Signature patterns of gene expression in mouse atherosclerosis and their correlation to human coronary disease.; Physiol Genomics, 22: 213-26 |
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GSE1560 |
| Tabone, Olivier et al. (2018) Endogenous Retroviruses Transcriptional Modulation After Severe Infection, Trauma and Burn.; Front Immunol, 9: 3091 |
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GSE77791 |
| Tabrizian, Nakisa et al. (2023) ASCL1 is activated downstream of the ROR2/CREB signaling pathway to support lineage plasticity in prostate cancer.; Cell Rep, 42: 112937 |
|
GSE224420 |
| Tacchetti, Paola et al. (2014) Bortezomib- and thalidomide-induced peripheral neuropathy in multiple myeloma: clinical and molecular analyses of a phase 3 study.; Am J Hematol, 89: 1085-91 |
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GSE58133 |
| Tachdjian, Raffi et al. (2009) Pathogenicity of a disease-associated human IL-4 receptor allele in experimental asthma.; J Exp Med, 206: 2191-204 |
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GSE18010 |
| Tachibana, Ken et al. (2021) Effects of Prenatal Exposure to Titanium Dioxide Nanoparticles on DNA Methylation and Gene Expression Profile in the Mouse Brain.; Front Toxicol, 3: 705910 |
|
GSE178199 |
| Tachibana, Naohiro et al. (2022) RSPO2 defines a distinct undifferentiated progenitor in the tendon/ligament and suppresses ectopic ossification.; Sci Adv, 8: eabn2138 |
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GSE188759 |
| Taddei, Andrea et al. (2008) Endothelial adherens junctions control tight junctions by VE-cadherin-mediated upregulation of claudin-5.; Nat Cell Biol, 10: 923-34 |
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GSE11674 |
| Tadele, Dagim Shiferaw et al. (2021) A cell competition-based small molecule screen identifies a novel compound that induces dual c-Myc depletion and p53 activation.; J Biol Chem, 296: 100179 |
|
GSE100678 |
| Tagaya, Mitsuhiro et al. (2009) Eviprostat suppresses proinflammatory gene expression in the prostate of rats with partial bladder-outlet obstruction: a genome-wide DNA microarray analysis.; Cytokine, [no vol.]: [no pages] |
|
GSE16063 |
| Taggart, David et al. (2018) Anti-PD-1/anti-CTLA-4 efficacy in melanoma brain metastases depends on extracranial disease and augmentation of CD8+T cell trafficking.; Proc Natl Acad Sci U S A, 115: E1540-E1549 |
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GSE109485 |
| Tagne, Jean-Bosco et al. (2015) Transcription factor and microRNA interactions in lung cells: an inhibitory link between NK2 homeobox 1, miR-200c and the developmental and oncogenic factors Nfib and Myb.; Respir Res, 16: 22 |
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GSE47054 |
| Tagore, Mohita et al. (2023) GABA Regulates Electrical Activity and Tumor Initiation in Melanoma.; Cancer Discov, 13: 2270-2291 |
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GSE236806 |
| Taguchi, Ayumu et al. (2011) Lung cancer signatures in plasma based on proteome profiling of mouse tumor models.; Cancer Cell, 20: 289-99 |
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GSE28480 |
| Taher, Leila et al. (2011) Global gene expression analysis of murine limb development.; PLoS One, 6: e28358 |
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GSE30138 |
| Tahiri, Azeddine et al. (2025) Vagal sensory neuron-derived FGF3 controls insulin secretion.; Dev Cell, 60: 51-61.e4 |
|
GSE239596 |
| Tahraoui-Bories, Julie et al. (2023) MBNL-dependent impaired development within the neuromuscular system in myotonic dystrophy type 1.; Neuropathol Appl Neurobiol, 49: e12876 |
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GSE171988 |
| Tai, Wai Lydia et al. (2023) Suppressing DNMT3a Alleviates the Intrinsic Epigenetic Barrier for Optic Nerve Regeneration and Restores Vision in Adult Mice.; bioRxiv, [no vol.]: [no pages] |
|
GSE229033 |
| Tai, Yu-Tzu et al. (2009) CS1 promotes multiple myeloma cell adhesion, clonogenic growth, and tumorigenicity via c-maf-mediated interactions with bone marrow stromal cells.; Blood, 113: 4309-18 |
|
GSE14680 |
| Taifour, Tarek et al. (2023) The tumor-derived cytokine Chi3l1 induces neutrophil extracellular traps that promote T cell exclusion in triple-negative breast cancer.; Immunity, 56: 2755-2772.e8 |
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GSE240336 |
| Taira, Ryoji et al. (2024) Gnao1 is a molecular switch that regulates the Rho signaling pathway in differentiating neurons.; Sci Rep, 14: 17097 |
|
GSE241258 |
| Taiwo, Oluwatosin et al. (2013) DNA methylation analysis of murine hematopoietic side population cells during aging.; Epigenetics, 8: 1114-22 |
|
GSE41658 |
| Tajima, Yoko et al. (2023) NOVA1 acts on Impact to regulate hypothalamic function and translation in inhibitory neurons.; Cell Rep, 42: 112050 |
|
GSE212473 |
| Tajima, Yoko et al. (2025) A humanized NOVA1 splicing factor alters mouse vocal communications.; Nat Commun, 16: 1542 |
|
GSE253297 |
| Tak, Jihoon et al. (2022) Gα12overexpression in hepatocytes by ER stress exacerbates acute liver injury via ROCK1-mediated miR-15a and ALOX12 dysregulation.; Theranostics, 12: 1570-1588 |
|
GSE173595 |
| Takacova, Sylvia et al. (2012) DNA damage response and inflammatory signaling limit the MLL-ENL-induced leukemogenesis in vivo.; Cancer Cell, 21: 517-31 |
|
GSE35038 |
| Takahashi, Eri et al. (2010) Tumor necrosis factor-alpha regulates transforming growth factor-beta-dependent epithelial-mesenchymal transition by promoting hyaluronan-CD44-moesin interaction.; J Biol Chem, 285: 4060-73 |
|
GSE12548 |
| Takahashi, Hideyuki et al. (2024) Reduced progranulin increases tau and α-synuclein inclusions and alters mouse tauopathy phenotypes via glucocerebrosidase.; Nat Commun, 15: 1434 |
|
GSE180672 |
| Taïb, Sonia et al. (2025) Vascular dysfunction is at the onset of oxaliplatin-induced peripheral neuropathy symptoms in mice.; Life Sci Alliance, 8: [no pages] |
|
GSE255097 |
| Świtońska, Karolina et al. (2018) Identification of Altered Developmental Pathways in Human Juvenile HD iPSC With 71Q and 109Q Using Transcriptome Profiling.; Front Cell Neurosci, 12: 528 |
|
GSE124664 |