List of all 20,076 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Xu, Li et al. (2024) N6-methyladenosine regulates metabolic remodeling in kidney aging through transcriptional regulator GLIS1.; BMC Biol, 22: 302 |
|
GSE237055 |
| Xu, Liang et al. (2018) Targetable BET proteins- and E2F1-dependent transcriptional program maintains the malignancy of glioblastoma.; Proc Natl Acad Sci U S A, 115: E5086-E5095 |
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GSE99175 GSE99181 |
| Xu, Lichao et al. (2021) Abnormal neocortex arealization and Sotos-like syndrome-associated behavior inSetd2mutant mice.; Sci Adv, 7: [no pages] |
|
GSE138153 |
| Xu, Lucy et al. (2024) Restoration of neuronal progenitors by partial reprogramming in the aged neurogenic niche.; Nat Aging, 4: 546-567 |
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GSE245385 |
| Xu, Mei et al. (2024) ISL1 and POU4F1 Directly Interact to Regulate the Differentiation and Survival of Inner Ear Sensory Neurons.; J Neurosci, 44: [no pages] |
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GSE233755 |
| Xu, Min et al. (2018) A systematic integrated analysis of brain expression profiles reveals YAP1 and other prioritized hub genes as important upstream regulators in Alzheimer's disease.; Alzheimers Dement, 14: 215-229 |
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GSE100891 |
| Xu, Nan et al. (2025) Genome-wide CRISPR screen identifies Menin and SUZ12 as regulators of human developmental timing.; Nat Cell Biol, [no vol.]: [no pages] |
|
GSE279032 |
| Xu, Peibo et al. (2024) High-throughput mapping of single-neuron projection and molecular features by retrograde barcoded labeling.; Elife, 13: [no pages] |
|
GSE210174.2 |
| Xu, Peipei et al. (2023) Trigeminal nerve-derived substance P regulates limbal stem cells by the PI3K-AKT pathway.; iScience, 26: 106688 |
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GSE213140 |
| Xu, Peng et al. (2017) Parvovirus B19 NS1 protein induces cell cycle arrest at G2-phase by activating the ATR-CDC25C-CDK1 pathway.; PLoS Pathog, 13: e1006266 |
|
GSE83525 |
| Xu, Peng et al. (2021) GSAP regulates lipid homeostasis and mitochondrial function associated with Alzheimer's disease.; J Exp Med, 218: [no pages] |
|
GSE157985 |
| Xu, Pengfei et al. (2024) Proteostasis perturbation of N-Myc leveraging HSP70 mediated protein turnover improves treatment of neuroendocrine prostate cancer.; Nat Commun, 15: 6626 |
|
GSE249917 |
| Xu, Pin et al. (2021) NPAS4 regulates the transcriptional response of the suprachiasmatic nucleus to light and circadian behavior.; Neuron, [no vol.]: [no pages] |
|
GSE148252.2 |
| Xu, Qianlan et al. (2022) Stress induced aging in mouse eye.; Aging Cell, 21: e13737 |
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GSE212186 |
| Xu, Qing et al. (2007) Identification of prostate cancer modifier pathways using parental strain expression mapping.; Proc Natl Acad Sci U S A, 104: 17771-6 |
|
GSE7270 |
| Xu, Ranjie et al. (2019) OLIG2 Drives Abnormal Neurodevelopmental Phenotypes in Human iPSC-Based Organoid and Chimeric Mouse Models of Down Syndrome.; Cell Stem Cell, 24: 908-926.e8 |
|
GSE124513 |
| Xu, Ruoqing et al. (2024) ALKBH5-mediated m6A demethylation ameliorates extracellular matrix deposition in cutaneous pathological fibrosis.; Clin Transl Med, 14: e70016 |
|
GSE264515 |
| Xu, Shasha et al. (2025) The transcription factor Bcl11a is essential for B-1a cell maintenance during aging.; Proc Natl Acad Sci U S A, 122: e2501974122 |
|
GSE272987 |
| Xu, Shenbin et al. (2021) Transcriptome Analysis of Microglia Reveals That the TLR2/IRF7 Signaling Axis Mediates Neuroinflammation After Subarachnoid Hemorrhage.; Front Aging Neurosci, 13: 645649 |
|
GSE167957 |
| Xu, Song-Jun et al. (2021) Chromatin-mediated alternative splicing regulates cocaine-reward behavior.; Neuron, 109: 2943-2966.e8 |
|
GSE180988 |
| Xu, Sutong et al. (2024) Characteristics of quiescent adult neural stem cells induced by the bFGF/BMP4 combination or BMP4 alonein vitro.; Front Cell Neurosci, 18: 1391556 |
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GSE267115 |
| Xu, Ting et al. (2022) Generation of a TPH2-EGFP reporter cell line for purification and monitoring of human serotonin neurons in vitro and in vivo.; Stem Cell Reports, 17: 2365-2379 |
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GSE206341 |
| Xu, Ting et al. (2023) Uncovering the role of FOXA2 in the Development of Human Serotonin Neurons.; Adv Sci (Weinh), 10: e2303884 |
|
GSE214605 |
| Xu, Wanying et al. (2024) STAG2 mutations regulate 3D genome organization, chromatin loops, and Polycomb signaling in glioblastoma multiforme.; J Biol Chem, 300: 107341 |
|
GSE240343 |
| Xu, Weihong et al. (2011) Human transcriptome array for high-throughput clinical studies.; Proc Natl Acad Sci U S A, 108: 3707-12 |
|
GSE26109 |
| Xu, Weize et al. (2021) Tet1 Regulates Astrocyte Development and Cognition of Mice Through Modulating GluA1.; Front Cell Dev Biol, 9: 644375 |
|
GSE164025 |
| Xu, Wenchang et al. (2023) Inhibiting HIF-1 signaling alleviates HTRA1-induced RPE senescence in retinal degeneration.; Cell Commun Signal, 21: 134 |
|
GSE186816 |
| Xu, Xiangru et al. (2007) Gene expression atlas of the mouse central nervous system: impact and interactions of age, energy intake and gender.; Genome Biol, 8: R234 |
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GSE8415 GSE8410 GSE8409 GSE8417 GSE8411 GSE8419 GSE8412 GSE8414 GSE8418 |
| Xu, Xiao et al. (2018) Species and cell-type properties of classically defined human and rodent neurons and glia.; Elife, 7: [no pages] |
|
GSE101913 GSE101917 |
| Xu, Xiaohong et al. (2017) Reversal of Phenotypic Abnormalities by CRISPR/Cas9-Mediated Gene Correction in Huntington Disease Patient-Derived Induced Pluripotent Stem Cells.; Stem Cell Reports, 8: 619-633 |
|
GSE93767 |
| Xu, Xiaowei et al. (2022) Mcm2 promotes stem cell differentiation via its ability to bind H3-H4.; Elife, 11: [no pages] |
|
GSE203271 |
| Xu, Xiaoyuan et al. (2013) Obesity activates a program of lysosomal-dependent lipid metabolism in adipose tissue macrophages independently of classic activation.; Cell Metab, 18: 816-30 |
|
GSE53403 |
| Xu, Xiguang et al. (2022) Neuronal Depolarization Induced RNA m5C Methylation Changes in Mouse Cortical Neurons.; Biology (Basel), 11: [no pages] |
|
GSE201636 |
| Xu, Xiguang et al. (2024) Spatial Transcriptomics and Single-Nucleus Multi-Omics Analysis Revealing the Impact of High Maternal Folic Acid Supplementation on Offspring Brain Development.; Nutrients, 16: [no pages] |
|
GSE269544 |
| Xu, Ya-Jie et al. (2022) KW-2449 and VPA exert therapeutic effects on human neurons and cerebral organoids derived from MECP2-null hESCs.; Stem Cell Res Ther, 13: 534 |
|
GSE214885 |
| Xu, Ya-Jie et al. (2023) ASH2L regulates postnatal neurogenesis through Onecut2-mediated inhibition of TGF-β signaling pathway.; Cell Death Differ, 30: 1943-1956 |
|
GSE234685 |
| Xu, Yan et al. (2007) Gene expression and biological processes influenced by deletion of Stat3 in pulmonary type II epithelial cells.; BMC Genomics, 8: 455 |
|
GSE6846 |
| Xu, Yan et al. (2009) C/EBP{alpha} is required for pulmonary cytoprotection during hyperoxia.; Am J Physiol Lung Cell Mol Physiol, 297: L286-98 |
|
GSE14917 |
| Xu, Yan et al. (2012) Transcriptional programs controlling perinatal lung maturation.; PLoS One, 7: e37046 |
|
GSE35485 |
| Xu, Yan et al. (2024) Loss of the vitamin D receptor triggers senescence in chronic myeloid leukemia via DDIT4-mediated DNA damage.; J Mol Cell Biol, 15: [no pages] |
|
GSE233861 |
| Xu, Yanyong et al. (2021) Hepatocyte ATF3 protects against atherosclerosis by regulating HDL and bile acid metabolism.; Nat Metab, 3: 59-74 |
|
GSE148301 |
| Xu, Yaqin et al. (2009) Influence of the cystic fibrosis transmembrane conductance regulator on expression of lipid metabolism-related genes in dendritic cells.; Respir Res, 10: 26 |
|
GSE9488 |
| Xu, Ye et al. (2019) TAF1 plays a critical role in AML1-ETO driven leukemogenesis.; Nat Commun, 10: 4925 |
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GSE115121.1 GSE115121.2 |
| Xu, Yichen et al. (2019) Translation control of the immune checkpoint in cancer and its therapeutic targeting.; Nat Med, 25: 301-311 |
|
GSE105147 |
| Xu, Yichi et al. (2016) Long-Range Chromosome Interactions Mediated by Cohesin Shape Circadian Gene Expression.; PLoS Genet, 12: e1005992 |
|
GSE68832 |
| Xu, Yingying et al. (2019) Rat Model of Cockayne Syndrome Neurological Disease.; Cell Rep, 29: 800-809.e5 |
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GSE126032 |
| Xu, You-Hai et al. (2011) Global gene expression profile progression in Gaucher disease mouse models.; BMC Genomics, 12: 20 |
|
GSE23408 |
| Xu, Yu-Xin et al. (2020) Interactomics Analyses of Wild-Type and Mutant A1CF Reveal Diverged Functions in Regulating Cellular Lipid Metabolism.; J Proteome Res, 19: 3968-3980 |
|
GSE152807 |
| Xu, Yuanzhong et al. (2016) Euglycemia Restoration by Central Leptin in Type 1 Diabetes Requires STAT3 Signaling but Not Fast-Acting Neurotransmitter Release.; Diabetes, 65: 1040-9 |
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GSE72227 |
| Xu, Yun et al. (2006) Role of cocaine- and amphetamine-regulated transcript in estradiol-mediated neuroprotection.; Proc Natl Acad Sci U S A, 103: 14489-94 |
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GSE5315 |
| Xu, Zhenhua et al. (2025) Nrf2 Deficiency in Müller Cells Exacerbates Pathological Neovascularization in Ischemic Retinopathy.; Arterioscler Thromb Vasc Biol, 45: e544-e562 |
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GSE304959 |
| Xu, Zhenyuan et al. (2021) Cell Shape and Matrix Stiffness Impact Schwann Cell Plasticity via YAP/TAZ and Rho GTPases.; Int J Mol Sci, 22: [no pages] |
|
GSE165206 |
| Xu, Zhenzhen et al. (2022) Positive interaction between GPER and β-alanine in the dorsal root ganglion uncovers potential mechanisms: mediating continuous neuronal sensitization and neuroinflammation responses in neuropathic pain.; J Neuroinflammation, 19: 164 |
|
GSE201163 |
| Xu, Zhifei et al. (2024) Inhibition of PRKAA/AMPK (Ser485/491) phosphorylation by crizotinib induces cardiotoxicity via perturbing autophagosome-lysosome fusion.; Autophagy, 20: 416-436 |
|
GSE210150 |
| Xue, Gongda et al. (2012) Akt/PKB-mediated phosphorylation of Twist1 promotes tumor metastasis via mediating cross-talk between PI3K/Akt and TGF-? signaling axes.; Cancer Discov, 2: 248-59 |
|
GSE29754 |
| Xue, Hong et al. (2025) Physiological role and mechanisms of action for a long noncoding haplotype region.; Cell Rep, 44: 115805 |
|
GSE284945 |
| Xue, Lu et al. (2013) Global expression profiling reveals genetic programs underlying the developmental divergence between mouse and human embryogenesis.; BMC Genomics, 14: 568 |
|
GSE39897 |
| Xue, Wei et al. (2011) Ciliary neurotrophic factor induces genes associated with inflammation and gliosis in the retina: a gene profiling study of flow-sorted, Müller cells.; PLoS One, 6: e20326 |
|
GSE27195 |
| Xue, Y et al. (2019) Transcriptomes in rat sciatic nerves at different stages of experimental autoimmune neuritis determined by RNA sequencing.; Clin Exp Immunol, 198: 184-197 |
|
GSE133750 |
| Xue, Yingchao et al. (2022) Mechanical tension mobilizes Lgr6+epidermal stem cells to drive skin growth.; Sci Adv, 8: eabl8698 |
|
GSE183441 |
| Xue, Yuan et al. (2009) Hypoxia-independent angiogenesis in adipose tissues during cold acclimation.; Cell Metab, 9: 99-109 |
|
GSE13432 |
| Xue, Yuanchao et al. (2013) Direct conversion of fibroblasts to neurons by reprogramming PTB-regulated microRNA circuits.; Cell, 152: 82-96 |
|
GSE42701 |
| Xue, Yuanchao et al. (2016) Sequential regulatory loops as key gatekeepers for neuronal reprogramming in human cells.; Nat Neurosci, 19: 807-15 |
|
GSE77523 |
| Xue, Yunlu et al. (2021) AAV-Txnip prolongs cone survival and vision in mouse models of retinitis pigmentosa.; Elife, 10: [no pages] |
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GSE168503 GSE161622 |
| Yabu, Julie M et al. (2016) Immune Profiles to Predict Response to Desensitization Therapy in Highly HLA-Sensitized Kidney Transplant Candidates.; PLoS One, 11: e0153355 |
|
GSE81454 |
| Yabuki, Yasushi et al. (2021) Cav3.1 t-type calcium channel is critical for cell proliferation and survival in newly generated cells of the adult hippocampus.; Acta Physiol (Oxf), 232: e13613 |
|
GSE158131 |
| Yabut, Odessa R et al. (2020) The Neocortical Progenitor Specification Program Is Established through Combined Modulation of SHH and FGF Signaling.; J Neurosci, 40: 6872-6887 |
|
GSE155851 |
| Yadav, Mahesh et al. (2012) Neuropilin-1 distinguishes natural and inducible regulatory T cells among regulatory T cell subsets in vivo.; J Exp Med, 209: 1713-22, S1-19 |
|
GSE39724 |
| Yadav, Shambhu et al. (2023) Sensory ataxia and cardiac hypertrophy caused by neurovascular oxidative stress in chemogenetic transgenic mouse lines.; Nat Commun, 14: 3094 |
|
GSE229143 |
| Yadav, Sudhanshu et al. (2022) PI3Kβ-regulated β-catenin mediates EZH2 removal from promoters controlling primed human ESC stemness and primitive streak gene expression.; Stem Cell Reports, 17: 2239-2255 |
|
GSE202163 |
| Yadav, Vijay K et al. (2011) Leptin-dependent serotonin control of appetite: temporal specificity, transcriptional regulation, and therapeutic implications.; J Exp Med, 208: 41-52 |
|
GSE26037 |
| Yaghmaeian Salmani, Behzad et al. (2018) Evolutionarily conserved anterior expansion of the central nervous system promoted by a common PcG-Hox program.; Development, 145: [no pages] |
|
GSE111232 |
| Yagi, Masaki et al. (2020) Identification of distinct loci for de novo DNA methylation by DNMT3A and DNMT3B during mammalian development.; Nat Commun, 11: 3199 |
|
GSE111172 |
| Yagi, Masaki et al. (2021) Dissecting dual roles of MyoD during lineage conversion to mature myocytes and myogenic stem cells.; Genes Dev, 35: 1209-1228 |
|
GSE169487 |
| Yagi, Ryoji et al. (2014) The transcription factor GATA3 is critical for the development of all IL-7R?-expressing innate lymphoid cells.; Immunity, 40: 378-88 |
|
GSE47851 |
| Yagil, Yoram et al. (2010) Geno-transcriptomic dissection of proteinuria in the uninephrectomized rat uncovers a molecular complexity with sexual dimorphism.; Physiol Genomics, 42A: 301-16 |
|
GSE14676 GSE14666 |
| Yagishita, Sosuke et al. (2017) Treatment of intermittent hypoxia increases phosphorylated tau in the hippocampus via biological processes common to aging.; Mol Brain, 10: 2 |
|
GSE62385 |
| Yagita-Sakamaki, Mayu et al. (2025) Intestinal Foxl1+ cell-derived CXCL12 maintains epithelial homeostasis by modulating cellular metabolism.; Int Immunol, 37: 235-250 |
|
GSE254705 |
| Yako, Hideji et al. (2021) Role of pyruvate in maintaining cell viability and energy production under high-glucose conditions.; Sci Rep, 11: 18910 |
|
GSE156433 |
| Yakulov, Toma A et al. (2018) CXCL12 and MYC control energy metabolism to support adaptive responses after kidney injury.; Nat Commun, 9: 3660 |
|
GSE102044 |
| Yakushiji-Kaminatsui, Nayuta et al. (2016) RING1 proteins contribute to early proximal-distal specification of the forelimb bud by restricting Meis2 expression.; Development, 143: 276-85 |
|
GSE70075 |
| Yamada, Misa et al. (2008) Prg1 is regulated by the basic helix-loop-helix transcription factor Math2.; J Neurochem, 106: 2375-84 |
|
GSE11829 |
| Yamada, Takeshi et al. (2009) Transcription factor ELF4 controls the proliferation and homing of CD8+ T cells via the Krüppel-like factors KLF4 and KLF2.; Nat Immunol, 10: 618-26 |
|
GSE15324 |
| Yamada, Tomoharu et al. (2023) Lenvatinib recruits cytotoxic GZMK+CD8 T cells in hepatocellular carcinoma.; Hepatol Commun, 7: [no pages] |
|
GSE223201 |
| Yamada, Tomoko et al. (2019) Sensory experience remodels genome architecture in neural circuit to drive motor learning.; Nature, 569: 708-713 |
|
GSE127995 |
| Yamada, Tomoya et al. (2020) Comparison of the Hepatic Effects of Phenobarbital in Chimeric Mice Containing Either Rat or Human Hepatocytes With Humanized Constitutive Androstane Receptor and Pregnane X Receptor Mice.; Toxicol Sci, 177: 362-376 |
|
GSE149228 |
| Yamada, Yasutaka et al. (2023) Targeting DNA methylation and B7-H3 in RB1-deficient and neuroendocrine prostate cancer.; Sci Transl Med, 15: eadf6732 |
|
GSE216713 |