List of all 20,076 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Yamada, Yasutaka et al. (2023) Targeting DNA methylation and B7-H3 in RB1-deficient and neuroendocrine prostate cancer.; Sci Transl Med, 15: eadf6732 |
|
GSE216052 GSE216712 GSE216053 |
| Yamada, Yu et al. (2025) Cardiac Reprogramming and Gata4 Overexpression Reduce Fibrosis and Improve Diastolic Dysfunction in Heart Failure With Preserved Ejection Fraction.; Circulation, 151: 379-395 |
|
GSE218733 |
| Yamada, Yuko et al. (2008) Oxidized low density lipoproteins induce a pathologic response by retinal pigmented epithelial cells.; J Neurochem, 105: 1187-97 |
|
GSE5741 |
| Yamaga, Yuichi et al. (2018) Gene expression profile of Dclk1+cells in intestinal tumors.; Dig Liver Dis, 50: 1353-1361 |
|
GSE99387 |
| Yamagami, Keitaro et al. (2024) Progranulin enhances the engraftment of transplanted human iPS cell-derived cerebral neurons.; Stem Cells Transl Med, 13: 1113-1128 |
|
GSE269438 |
| Yamagishi, Aya et al. (2014) Gene profiling and bioinformatics analyses reveal time course differential gene expression in surgically resected colorectal tissues.; Oncol Rep, 31: 1531-8 |
|
GSE50746 |
| Yamagishi, Makoto et al. (2012) Polycomb-mediated loss of miR-31 activates NIK-dependent NF-?B pathway in adult T cell leukemia and other cancers.; Cancer Cell, 21: 121-35 |
|
GSE33615 |
| Yamaguchi, Atsushi et al. (2020) Temporal expression profiling of DAMPs-related genes revealed the biphasic post-ischemic inflammation in the experimental stroke model.; Mol Brain, 13: 57 |
|
GSE147060 |
| Yamaguchi, Hiroo et al. (2024) A rapidly progressive multiple system atrophy-cerebellar variant model presenting marked glial reactions with inflammation and spreading of α-synuclein oligomers and phosphorylated α-synuclein aggregates.; Brain Behav Immun, 121: 122-141 |
|
GSE205662 |
| Yamaguchi, K et al. (2010) Identification of an ovarian clear cell carcinoma gene signature that reflects inherent disease biology and the carcinogenic processes.; Oncogene, 29: 1741-52 |
|
GSE29175 |
| Yamaguchi, Shinpei et al. (2012) Tet1 controls meiosis by regulating meiotic gene expression.; Nature, 492: 443-7 |
|
GSE41908 |
| Yamaguchi, Takashi et al. (2020) Posterior amygdala regulates sexual and aggressive behaviors in male mice.; Nat Neurosci, 23: 1111-1124 |
|
GSE151798 |
| Yamaguchi, Toshihiro et al. (2020) Cardiac dopamine D1 receptor triggers ventricular arrhythmia in chronic heart failure.; Nat Commun, 11: 4364 |
|
GSE116250 |
| Yamaguchi, Umio et al. (2008) Distinct gene expression-defined classes of gastrointestinal stromal tumor.; J Clin Oncol, 26: 4100-8 |
|
GSE8167 |
| Yamaguchi, Yoshiaki et al. (2022) Nmu/Nms/Gpr176 Triple-Deficient Mice Show Enhanced Light-Resetting of Circadian Locomotor Activity.; Biol Pharm Bull, 45: 1172-1179 |
|
GSE184440 |
| Yamaguchi, Yoshiaki et al. (2023) An intact pituitary vasopressin system is critical for building a robust circadian clock in the suprachiasmatic nucleus.; Proc Natl Acad Sci U S A, 120: e2308489120 |
|
GSE226929 |
| Yamaguchi, Yuji et al. (2008) Dickkopf 1 (DKK1) regulates skin pigmentation and thickness by affecting Wnt/beta-catenin signaling in keratinocytes.; FASEB J, 22: 1009-20 |
|
GSE9211 |
| Yamaji, Daisuke et al. (2013) Sequential activation of genetic programs in mouse mammary epithelium during pregnancy depends on STAT5A/B concentration.; Nucleic Acids Res, 41: 1622-36 |
|
GSE37646 |
| Yamaji, Masashi et al. (2013) PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells.; Cell Stem Cell, 12: 368-82 |
|
GSE42580 |
| Yamakawa, Hidekuni et al. (2017) The Transcription Factor Sp3 Cooperates with HDAC2 to Regulate Synaptic Function and Plasticity in Neurons.; Cell Rep, 20: 1319-1334 |
|
GSE87441 |
| Yamakawa, Hiroyuki et al. (2015) Fibroblast Growth Factors and Vascular Endothelial Growth Factor Promote Cardiac Reprogramming under Defined Conditions.; Stem Cell Reports, 5: 1128-1142 |
|
GSE73839 |
| Yamamizu, Kohei et al. (2013) Identification of transcription factors for lineage-specific ESC differentiation.; Stem Cell Reports, 1: 545-59 |
|
GSE43971 |
| Yamamizu, Kohei et al. (2016) Generation and gene expression profiling of 48 transcription-factor-inducible mouse embryonic stem cell lines.; Sci Rep, 6: 25667 |
|
GSE72350 |
| Yamamoto, Junichi et al. (2020) ARID2 is a pomalidomide-dependent CRL4CRBNsubstrate in multiple myeloma cells.; Nat Chem Biol, 16: 1208-1217 |
|
GSE126463 |
| Yamamoto, Shinichi et al. (2022) In VitroGeneration of Brain Regulatory T Cells by Co-culturing With Astrocytes.; Front Immunol, 13: 960036 |
|
GSE203050 |
| Yamamoto, Shoji et al. (2014) JARID1B is a luminal lineage-driving oncogene in breast cancer.; Cancer Cell, 25: 762-77 |
|
GSE45732 |
| Yamamoto, So et al. (2021) Rosmarinic acid suppresses tau phosphorylation and cognitive decline by downregulating the JNK signaling pathway.; NPJ Sci Food, 5: 1 |
|
GSE128494 |
| Yamamoto, Takehiro et al. (2024) PRMT1 Sustains De Novo Fatty Acid Synthesis by Methylating PHGDH to Drive Chemoresistance in Triple-Negative Breast Cancer.; Cancer Res, 84: 1065-1083 |
|
GSE250022 |
| Yamamoto, Yuta et al. (2009) Changes in behavior and gene expression induced by caloric restriction in C57BL/6 mice.; Physiol Genomics, [no vol.]: [no pages] |
|
GSE15860 |
| Yamamoto, Yuta et al. (2010) Interleukin-18 deficiency reduces neuropeptide gene expressions in the mouse amygdala related with behavioral change.; J Neuroimmunol, 229: 129-39 |
|
GSE19522 |
| Yamanaka, R et al. (2006) Identification of expressed genes characterizing long-term survival in malignant glioma patients.; Oncogene, 25: 5994-6002 |
|
GSE4381 |
| Yamanaka, Tomoyuki et al. (2016) Genome-wide analyses in neuronal cells reveal that upstream transcription factors regulate lysosomal gene expression.; FEBS J, 283: 1077-87 |
|
GSE76615 |
| Yamanaka, Tomoyuki et al. (2020) Gene expression profiling in neuronal cells identifies a different type of transcriptome modulated by NF-Y.; Sci Rep, 10: 21714 |
|
GSE151146 GSE151145 GSE151275 GSE151144 |
| Yamane, Junko et al. (2016) Prediction of developmental chemical toxicity based on gene networks of human embryonic stem cells.; Nucleic Acids Res, 44: 5515-28 |
|
GSE60154 |
| Yamane, Junko et al. (2022) StemPanTox: A fast and wide-target drug assessment system for tailor-made safety evaluations using personalized iPS cells.; iScience, 25: 104538 |
|
GSE188203 |
| Yamanishi, Kyosuke et al. (2020) Analysis of genes linked to depressive-like behaviors in interleukin-18-deficient mice: Gene expression profiles in the brain.; Biomed Rep, 12: 3-10 |
|
GSE64307 |
| Yamanishi, Kyosuke et al. (2022) Acute stress induces severe neural inflammation and overactivation of glucocorticoid signaling in interleukin-18-deficient mice.; Transl Psychiatry, 12: 404 |
|
GSE207669 |
| Yamano, Noriko et al. (2010) Metastable primordial germ cell-like state induced from mouse embryonic stem cells by Akt activation.; Biochem Biophys Res Commun, 392: 311-6 |
|
GSE18813 |
| Yamaoka, Masaya et al. (2012) A pilot investigation of visceral fat adiposity and gene expression profile in peripheral blood cells.; PLoS One, 7: e47377 |
|
GSE28038 |
| Yamashita, Akira et al. (2023) ILF3 prion-like domain regulates gene expression and fear memory under chronic stress.; iScience, 26: 106229 |
|
GSE209902 |
| Yamashita, Daisuke et al. (2015) miR340 suppresses the stem-like cell function of glioma-initiating cells by targeting tissue plasminogen activator.; Cancer Res, 75: 1123-33 |
|
GSE61078 |
| Yamashita, Hirofumi et al. (2022) Comprehensive expression analysis with cell-type-specific transcriptome in ALS-linked mutant SOD1 mice: Revisiting the active role of glial cells in disease.; Front Cell Neurosci, 16: 1045647 |
|
GSE220705 |
| Yamashita, Nami et al. (2023) MUC1-C Dictates PBRM1-Mediated Chronic Induction of Interferon Signaling, DNA Damage Resistance, and Immunosuppression in Triple-Negative Breast Cancer.; Mol Cancer Res, 21: 274-289 |
|
GSE206212 |
| Yamashita, Nami et al. (2023) MUC1-C integrates aerobic glycolysis with suppression of oxidative phosphorylation in triple-negative breast cancer stem cells.; iScience, 26: 108168 |
|
GSE222377 |
| Yamashita, Y et al. (2007) Analysis of chromosome copy number in leukemic cells by different microarray platforms.; Leukemia, 21: 1333-7 |
|
GSE4608 GSE4610 |
| Yamauchi, Kaori et al. (2020) Overexpression of Nuclear Receptor 5A1 Induces and Maintains an Intermediate State of Conversion between Primed and Naive Pluripotency.; Stem Cell Reports, 14: 506-519 |
|
GSE101043 |
| Yamauchi, Mai et al. (2012) Epidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinoma.; PLoS One, 7: e43923 |
|
GSE31210 |
| Yamauchi, Shota et al. (2016) STAT1 is essential for the inhibition of hepatitis C virus replication by interferon-λ but not by interferon-α.; Sci Rep, 6: 38336 |
|
GSE84693 |
| Yamauchi, Yuki et al. (2021) Maslinic Acid Attenuates Denervation-Induced Loss of Skeletal Muscle Mass and Strength.; Nutrients, 13: [no pages] |
|
GSE181031 |
| Yamazaki, Fumiyoshi et al. (2015) The Lhx9 homeobox gene controls pineal gland development and prevents postnatal hydrocephalus.; Brain Struct Funct, 220: 1497-509 |
|
GSE46127 |
| Yamazaki, Shunji et al. (2012) FK1706, a novel non-immunosuppressive immunophilin ligand, modifies gene expression in the dorsal root ganglia during painful diabetic neuropathy.; Neurol Res, 34: 469-77 |
|
GSE34000 |
| Yambire, King Faisal et al. (2019) Impaired lysosomal acidification triggers iron deficiency and inflammation in vivo.; Elife, 8: [no pages] |
|
GSE134704 |
| Yamin, Ghiam et al. (2016) Design, Characterization, and Use of a Novel Amyloid β-Protein Control for Assembly, Neurotoxicity, and Gene Expression Studies.; Biochemistry, 55: 5049-60 |
|
GSE85952 |
| Yan, Chenchao et al. (2023) Translational landscape in human early neural fate determination.; Development, 150: [no pages] |
|
GSE208082 |
| Yan, Chufan et al. (2025) Sex differences on laser-induced choroidal neovascularization and short-chain fatty acid treatment in a mouse model.; J Neuroinflammation, 22: 188 |
|
GSE299691 |
| Yan, Dongyao et al. (2016) STAT3 and STAT6 Signaling Pathways Synergize to Promote Cathepsin Secretion from Macrophages via IRE1? Activation.; Cell Rep, 16: 2914-27 |
|
GSE70626 |
| Yan, Fangfang et al. (2024) Single-cell multiomics decodes regulatory programs for mouse secondary palate development.; Nat Commun, 15: 821 |
|
GSE252592 |
| Yan, Gonghong et al. (2022) BET inhibition induces vulnerability to MCL1 targeting through upregulation of fatty acid synthesis pathway in breast cancer.; Cell Rep, 40: 111304 |
|
GSE209934 |
| Yan, Han et al. (2011) Circulating IGF1 regulates hippocampal IGF1 levels and brain gene expression during adolescence.; J Endocrinol, 211: 27-37 |
|
GSE29512 |
| Yan, Hao et al. (2024) Programmed RNA editing with an evolved bacterial adenosine deaminase.; Nat Chem Biol, 20: 1361-1370 |
|
GSE208401 |
| Yan, Liying et al. (2013) Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells.; Nat Struct Mol Biol, 20: 1131-9 |
|
GSE36552 |
| Yan, Liying et al. (2016) Epigenomic Landscape of Human Fetal Brain, Heart, and Liver.; J Biol Chem, 291: 4386-98 |
|
GSE63634 |
| Yan, Qian et al. (2023) Transcriptomic reveals the ferroptosis features of host response in a mouse model of Zika virus infection.; J Med Virol, 95: e28386 |
|
GSE213898 |
| Yan, Qinghong et al. (2015) Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators.; Proc Natl Acad Sci U S A, 112: 3445-50 |
|
SRP055008 |
| Yan, Shun et al. (2020) CHD7 regulates cardiovascular development through ATP-dependent and -independent activities.; Proc Natl Acad Sci U S A, 117: 28847-28858 |
|
GSE149860 |
| Yan, Wenjun et al. (2020) Mouse Retinal Cell Atlas: Molecular Identification of over Sixty Amacrine Cell Types.; J Neurosci, 40: 5177-5195 |
|
GSE149715 |
| Yan, Wusheng et al. (2012) Identification of unique expression signatures and therapeutic targets in esophageal squamous cell carcinoma.; BMC Res Notes, 5: 73 |
|
GSE29001 |
| Yan, Wusheng et al. (2013) Three-dimensional mRNA measurements reveal minimal regional heterogeneity in esophageal squamous cell carcinoma.; Am J Pathol, 182: 529-39 |
|
GSE33426 |
| Yan, Xiaohe et al. (2014) Peroxidasin is essential for eye development in the mouse.; Hum Mol Genet, 23: 5597-614 |
|
GSE49704 |
| Yan, Xiaoxiang et al. (2017) Dectin-2 Deficiency Modulates Th1 Differentiation and Improves Wound Healing After Myocardial Infarction.; Circ Res, 120: 1116-1129 |
|
GSE88924 |
| Yan, Xiaoxu et al. (2025) Microbial infection instigates tau-related pathology in Alzheimer's disease via activating neuroimmune cGAS-STING pathway.; Neuroscience, 572: 122-133 |
|
GSE264504 |
| Yan, Ying et al. (2022) Hepatic thyroid hormone signalling modulates glucose homeostasis through the regulation of GLP-1 production via bile acid-mediated FXR antagonism.; Nat Commun, 13: 6408 |
|
GSE184261 |
| Yan, Yiqing et al. (2021) Interleukin-6 produced by enteric neurons regulates the number and phenotype of microbe-responsive regulatory T cells in the gut.; Immunity, 54: 499-513.e5 |
|
GSE164575 |
| Yan, Yuze et al. (2022) ASH1L haploinsufficiency results in autistic-like phenotypes in mice and links Eph receptor gene to autism spectrum disorder.; Neuron, [no vol.]: [no pages] |
|
GSE184375 GSE173502 |
| Yan, Zhaoqi et al. (2019) Deficiency of Socs3 leads to brain-targeted EAE via enhanced neutrophil activation and ROS production.; JCI Insight, 5: [no pages] |
|
GSE122353 |
| Yanagida, Atsuko et al. (2011) Downregulation of the Wnt antagonist Dkk2 links the loss of Sept4 and myofibroblastic transformation of hepatic stellate cells.; Biochim Biophys Acta, 1812: 1403-11 |
|
GSE24588 |
| Yanagida, Keisuke et al. (2020) Sphingosine 1-Phosphate Receptor Signaling Establishes AP-1 Gradients to Allow for Retinal Endothelial Cell Specialization.; Dev Cell, 52: 779-793.e7 |
|
GSE141440 |
| Yang, Annan et al. (2016) Increased Skin Tumor Incidence and Keratinocyte Hyper-Proliferation in a Mouse Model of Down Syndrome.; PLoS One, 11: e0146570 |
|
GSE40382 |
| Yang, Annie et al. (2006) Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells.; Mol Cell, 24: 593-602 |
|
GSE5993 |
| Yang, Beimeng et al. (2019) NEIL1 stimulates neurogenesis and suppresses neuroinflammation after stress.; Free Radic Biol Med, 141: 47-58 |
|
GSE130034 |
| Yang, Beimeng et al. (2021) NAD+supplementation prevents STING-induced senescence in ataxia telangiectasia by improving mitophagy.; Aging Cell, 20: e13329 |
|
GSE152286 GSE152287 |
| Yang, Brenda et al. (2025) Murine gut microbiota dysbiosis via enteric infection modulates the foreign body response to a distal biomaterial implant.; Proc Natl Acad Sci U S A, 122: e2422169122 |
|
GSE293564 |
| Yang, Cha et al. (2025) TMEM106B deficiency leads to alterations in lipid metabolism and obesity in the TDP-43Q331Kknock-in mouse model.; Commun Biol, 8: 315 |
|
GSE287573 |
| Yang, Cheng et al. (2024) EHMT2-mediated transcriptional reprogramming drives neuroendocrine transformation in non-small cell lung cancer.; Proc Natl Acad Sci U S A, 121: e2317790121 |
|
GSE242843 |
| Yang, Chul Min et al. (2021) p53 expression confers sensitivity to 5-fluorouracil via distinct chromatin accessibility dynamics in human colorectal cancer.; Oncol Lett, 21: 226 |
|
GSE157951 |
| Yang, Cliff Y et al. (2011) The transcriptional regulators Id2 and Id3 control the formation of distinct memory CD8+ T cell subsets.; Nat Immunol, 12: 1221-9 |
|
GSE32675 |
| Yang, Dianer et al. (2013) Overexpression of vascular endothelial growth factor in the germinal matrix induces neurovascular proteases and intraventricular hemorrhage.; Sci Transl Med, 5: 193ra90 |
|
GSE47903 |
| Yang, Eun Jae et al. (2022) Co-inhibition of ATM and ROCK synergistically improves cell proliferation in replicative senescence by activating FOXM1 and E2F1.; Commun Biol, 5: 702 |
|
GSE178115 |
| Yang, Feng et al. (2021) p113 isoform encoded by CUX1 circular RNA drives tumor progression via facilitating ZRF1/BRD4 transactivation.; Mol Cancer, 20: 123 |
|
GSE182329 |
| Yang, Guang et al. (2014) An eIF4E1/4E-T complex determines the genesis of neurons from precursors by translationally repressing a proneurogenic transcription program.; Neuron, 84: 723-39 |
|
GSE61729 |
| Yang, Guang et al. (2016) A Glo1-Methylglyoxal Pathway that Is Perturbed in Maternal Diabetes Regulates Embryonic and Adult Neural Stem Cell Pools in Murine Offspring.; Cell Rep, 17: 1022-1036 |
|
GSE79737 |
| Yang, Guangrui et al. (2016) Timing of expression of the core clock gene Bmal1 influences its effects on aging and survival.; Sci Transl Med, 8: 324ra16 |
|
GSE70497 |