List of all 20,076 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Chen, Xue et al. (2024) CARM1 hypermethylates the NuRD chromatin remodeling complex to promote cell cycle gene expression and breast cancer development.; Nucleic Acids Res, 52: 6811-6829 |
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GSE131864 |
| Chen, Xuefen et al. (2012) Requirement for the histone deacetylase Hdac3 for the inflammatory gene expression program in macrophages.; Proc Natl Acad Sci U S A, 109: E2865-74 |
|
GSE33162 |
| Chen, Xuelian et al. (2023) Different immunological mechanisms between AQP4 antibody-positive and MOG antibody-positive optic neuritis based on RNA sequencing analysis of whole blood.; Front Immunol, 14: 1095966 |
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GSE226808 |
| Chen, Xuemei et al. (2018) Phf8 histone demethylase deficiency causes cognitive impairments through the mTOR pathway.; Nat Commun, 9: 114 |
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GSE107210 |
| Chen, Xueqin et al. (2023) IDH1 mutation impairs antiviral response and potentiates oncolytic virotherapy in glioma.; Nat Commun, 14: 6781 |
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GSE208634 |
| Chen, Xuewen et al. (2023) In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response.; Sci Adv, 9: eadj4884 |
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GSE234123 |
| Chen, Y G et al. (2013) Temporal induction of immunoregulatory processes coincides with age-dependent resistance to viral-induced type 1 diabetes.; Genes Immun, 14: 387-400 |
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GSE40497 |
| Chen, Yan-Yan et al. (2022) Combination of paeoniflorin and liquiritin alleviates neuropathic pain by lipid metabolism and calcium signaling coordination.; Front Pharmacol, 13: 944386 |
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GSE205906 |
| Chen, Yanan et al. (2025) Integrated stress response inhibition prolongs the lifespan of a Pelizaeus-Merzbacher disease mouse model by increasing oligodendrocyte survival.; Nat Commun, 17: 1285 |
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GSE277705.1 |
| Chen, Yanqing et al. (2008) Variations in DNA elucidate molecular networks that cause disease.; Nature, 452: 429-35 |
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GSE2814 GSE3086 |
| Chen, Yanting et al. (2023) Blood-brain barrier dysfunction and Alzheimer's disease: associations, pathogenic mechanisms, and therapeutic potential.; Front Aging Neurosci, 15: 1258640 |
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GSE272179 |
| Chen, Yaoyu et al. (2013) Targeting HSF1 sensitizes cancer cells to HSP90 inhibition.; Oncotarget, 4: 816-29 |
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GSE44867 |
| Chen, Ye et al. (2019) Bromodomain and extraterminal proteins foster the core transcriptional regulatory programs and confer vulnerability in liposarcoma.; Nat Commun, 10: 1353 |
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GSE111252 |
| Chen, Yelin et al. (2014) Activity-induced Nr4a1 regulates spine density and distribution pattern of excitatory synapses in pyramidal neurons.; Neuron, 83: 431-443 |
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GSE76805 |
| Chen, Yelin et al. (2014) Regulation of neuronal gene expression and survival by basal NMDA receptor activity: a role for histone deacetylase 4.; J Neurosci, 34: 15327-39 |
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GSE54708 |
| Chen, Yi A et al. (2022) In vivo genome editing using novel AAV-PHP variants rescues motor function deficits and extends survival in a SOD1-ALS mouse model.; Gene Ther, [no vol.]: 1-12 |
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GSE213125 |
| Chen, Yi-Guang et al. (2014) Molecular signatures differentiate immune states in Type 1 diabetes families.; Diabetes, [no vol.]: [no pages] |
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GSE52724 |
| Chen, Yi-Wen et al. (2002) Response of rat muscle to acute resistance exercise defined by transcriptional and translational profiling.; J Physiol, 545: 27-41 |
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GSE467 |
| Chen, Yi-Wen et al. (2007) Transcriptional pathways associated with skeletal muscle disuse atrophy in humans.; Physiol Genomics, 31: 510-20 |
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GSE8872 |
| Chen, Yi-Wen et al. (2008) Duration of chronic inflammation alters gene expression in muscle from untreated girls with juvenile dermatomyositis.; BMC Immunol, 9: 43 |
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GSE11971 |
| Chen, Yifang et al. (2015) SOX2 expression inhibits terminal epidermal differentiation.; Exp Dermatol, 24: 974-6 |
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GSE68073 |
| Chen, Yifei et al. (2024) LINC00894 Regulates Cerebral Ischemia/Reperfusion Injury by Stabilizing EIF5 and Facilitating ATF4-Mediated Induction of FGF21 and ACOD1 Expression.; Neurochem Res, 49: 2910-2925 |
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GSE268399 |
| Chen, Ying et al. (2023) Huangqi decoction ameliorates kidney injury in db/db mice by regulating the BMP/Smad signaling pathway.; BMC Complement Med Ther, 23: 209 |
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GSE225477 |
| Chen, Ying-Jiun J et al. (2017) Single-cell RNA sequencing identifies distinct mouse medial ganglionic eminence cell types.; Sci Rep, 7: 45656 |
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GSE94579 |
| Chen, YingJie et al. (2003) Alterations of gene expression in failing myocardium following left ventricular assist device support.; Physiol Genomics, 14: 251-60 |
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GSE430 |
| Chen, Yiran et al. (2022) CRISPR screens uncover protective effect of PSTK as a regulator of chemotherapy-induced ferroptosis in hepatocellular carcinoma.; Mol Cancer, 21: 11 |
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GSE182185 |
| Chen, Yong et al. (2022) Chinese herbal formula (GCNY)-medicated serum alleviates peroxidation induced by H2O2in human microglial cells.; Front Neurosci, 16: 990040 |
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GSE210945 |
| Chen, Yonghong et al. (2023) Hierarchical Phosphorylation of HOXB13 by mTOR Dictates Its Activity and Oncogenic Function in Prostate Cancer.; Mol Cancer Res, 21: 1050-1063 |
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GSE225206 GSE225205 |
| Chen, Youwei et al. (2023) Short C-terminal Musashi-1 proteins regulate pluripotency states in embryonic stem cells.; Cell Rep, 42: 113308 |
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GSE197608.1 GSE197608.2 |
| Chen, Yu et al. (2013) ETS factors reprogram the androgen receptor cistrome and prime prostate tumorigenesis in response to PTEN loss.; Nat Med, 19: 1023-9 |
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GSE46799 GSE46329 GSE46360 |
| Chen, Yu et al. (2016) Synergistically acting agonists and antagonists of G protein-coupled receptors prevent photoreceptor cell degeneration.; Sci Signal, 9: ra74 |
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GSE79061 |
| Chen, Yu et al. (2024) The Ednrb-Aim2-AKT axis regulates neural crest-derived melanoblast proliferation during early development.; Development, 151: [no pages] |
|
GSE275956 |
| Chen, Yu-Chen et al. (2019) A NeuroD1 AAV-Based Gene Therapy for Functional Brain Repair after Ischemic Injury through In Vivo Astrocyte-to-Neuron Conversion.; Mol Ther, [no vol.]: [no pages] |
|
GSE135981 |
| Chen, Yu-Jung et al. (2024) Gliocidin is a nicotinamide-mimetic prodrug that targets glioblastoma.; Nature, 636: 466-473 |
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GSE277301.1 GSE277301.2 |
| Chen, Yuanyuan et al. (2024) Oral 8-aminoguanine against age-related retinal degeneration.; Res Sq, [no vol.]: [no pages] |
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GSE254123 |
| Chen, Yue-Feng et al. (2012) Regulation of gene expression with thyroid hormone in rats with myocardial infarction.; PLoS One, 7: e40161 |
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GSE35088 |
| Chen, Yun-Ti et al. (2023) Transcriptomic analysis of World Trade Center particulate Matter-induced pulmonary inflammation and drug treatments.; Environ Int, 177: 108027 |
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GSE217456 |
| Chen, Yung-Che et al. (2013) Peripheral immune cell gene expression changes in advanced non-small cell lung cancer patients treated with first line combination chemotherapy.; PLoS One, 8: e57053 |
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GSE39345 |
| Chen, Zhang-Peng et al. (2023) Lipid-accumulated reactive astrocytes promote disease progression in epilepsy.; Nat Neurosci, 26: 542-554 |
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GSE197015.3 GSE197015.1 GSE224494 GSE197015.2 |
| Chen, Zhe et al. (2021) Nuclear DEK preserves hematopoietic stem cells potential via NCoR1/HDAC3-Akt1/2-mTOR axis.; J Exp Med, 218: [no pages] |
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GSE166431 |
| Chen, Zhen et al. (2021) Cochlear Sox2+Glial Cells Are Potent Progenitors for Spiral Ganglion Neuron Reprogramming Induced by Small Molecules.; Front Cell Dev Biol, 9: 728352 |
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GSE169042 |
| Chen, Zhi Xiong et al. (2014) RNA helicase A is a downstream mediator of KIF1B? tumor-suppressor function in neuroblastoma.; Cancer Discov, 4: 434-51 |
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GSE44585 |
| Chen, Zhuo et al. (2024) Histone lactylation mediated by Fam172a in POMC neurons regulates energy balance.; Nat Commun, 15: 10111 |
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GSE280694 |
| Chen, Zhuoxin et al. (2024) Increased enhancer-promoter interactions during developmental enhancer activation in mammals.; Nat Genet, 56: 675-685 |
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GSE217078 |
| Chen, Ziyan et al. (2014) FGF signaling activates a Sox9-Sox10 pathway for the formation and branching morphogenesis of mouse ocular glands.; Development, 141: 2691-701 |
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GSE54796 |
| Chen-Plotkin, Alice S et al. (2008) Variations in the progranulin gene affect global gene expression in frontotemporal lobar degeneration.; Hum Mol Genet, 17: 1349-62 |
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GSE13162 |
| Chendamarai, Ezhilarasi et al. (2015) Comparison of newly diagnosed and relapsed patients with acute promyelocytic leukemia treated with arsenic trioxide: insight into mechanisms of resistance.; PLoS One, 10: e0121912 |
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GSE42030 |
| Cheng, Bi-Hua et al. (2010) Microarray studies on effects of Pneumocystis carinii infection on global gene expression in alveolar macrophages.; BMC Microbiol, 10: 103 |
|
GSE20149 |
| Cheng, Bo et al. (2024) Comparison of human pluripotent stem cell differentiation protocols to generate neuroblastoma tumors.; Sci Rep, 14: 23050 |
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GSE264211 |
| Cheng, Cheng et al. (2018) Characterization of a Mouse Model of Börjeson-Forssman-Lehmann Syndrome.; Cell Rep, 25: 1404-1414.e6 |
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GSE119973 |
| Cheng, Chi-Keung et al. (2023) Deep genomic characterization highlights complexities and prognostic markers of pediatric acute myeloid leukemia.; Commun Biol, 6: 356 |
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GSE222811 |
| Cheng, Chia-Ho et al. (2013) Keratin gene expression profiles after digit amputation in C57BL/6 vs. regenerative MRL mice imply an early regenerative keratinocyte activated-like state.; Physiol Genomics, 45: 409-21 |
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GSE26227 |
| Cheng, Christine S et al. (2017) Iterative Modeling Reveals Evidence of Sequential Transcriptional Control Mechanisms.; Cell Syst, 4: 330-343.e5 |
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GSE68318 |
| Cheng, Ee-Chun et al. (2014) PIWI proteins are dispensable for mouse somatic development and reprogramming of fibroblasts into pluripotent stem cells.; PLoS One, 9: e97821 |
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GSE54619 |
| Cheng, Fubo et al. (2022) DYT6 mutated THAP1 is a cell type dependent regulator of the SP1 family.; Brain, [no vol.]: [no pages] |
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GSE184959 GSE184958 GSE147633 |
| Cheng, Georgiana et al. (2004) Conserved and muscle-group-specific gene expression patterns shape postnatal development of the novel extraocular muscle phenotype.; Physiol Genomics, 18: 184-95 |
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GSE903 |
| Cheng, Hao et al. (2018) Repression of human and mouse brain inflammaging transcriptome by broad gene-body histone hyperacetylation.; Proc Natl Acad Sci U S A, 115: 7611-7616 |
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GSE106669.2 GSE106669.1 |
| Cheng, Hong et al. (2006) In vivo function of the orphan nuclear receptor NR2E3 in establishing photoreceptor identity during mammalian retinal development.; Hum Mol Genet, 15: 2588-602 |
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GSE5338 |
| Cheng, Hong Sheng et al. (2024) Dual p38MAPK and MEK inhibition disrupts adaptive chemoresistance in mesenchymal glioblastoma to temozolomide.; Neuro Oncol, 26: 1247-1261 |
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GSE211462 |
| Cheng, Jia et al. (2019) HCN2 Channels in Cholinergic Interneurons of Nucleus Accumbens Shell Regulate Depressive Behaviors.; Neuron, 101: 662-672.e5 |
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GSE106389 |
| Cheng, Jie et al. (2024) RNA-seq revealed the protective effect of Huangqi Guizhi Wuwu Decoction against cisplatin induced PC12 cell injury.; Int J Neurosci, [no vol.]: 1-11 |
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GSE269389 |
| Cheng, Jinbo et al. (2021) Microglial Calhm2 regulates neuroinflammation and contributes to Alzheimer's disease pathology.; Sci Adv, 7: [no pages] |
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GSE164415 |
| Cheng, Junjie et al. (2024) Polo-like kinase 2 promotes microglial activation via regulation of the HSP90α/IKKβ pathway.; Cell Rep, 43: 114827 |
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GSE272635 |
| Cheng, Kwai Wa et al. (2012) Rab25 increases cellular ATP and glycogen stores protecting cancer cells from bioenergetic stress.; EMBO Mol Med, 4: 125-41 |
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GSE28299 |
| Cheng, Lele et al. (2021) Glycoursodeoxycholic acid ameliorates diet-induced metabolic disorders with inhibiting endoplasmic reticulum stress.; Clin Sci (Lond), 135: 1689-1706 |
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GSE168822 |
| Cheng, Liang et al. (2019) Chromatin Assembly Factor 1 (CAF-1) facilitates the establishment of facultative heterochromatin during pluripotency exit.; Nucleic Acids Res, 47: 11114-11131 |
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GSE130706 |
| Cheng, Lin et al. (2018) Ezh2 does not mediate retinal ganglion cell homeostasis or their susceptibility to injury.; PLoS One, 13: e0191853 |
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GSE93674 |
| Cheng, Ningyan et al. (2022) STAG2 promotes the myelination transcriptional program in oligodendrocytes.; Elife, 11: [no pages] |
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GSE186890 |
| Cheng, Pei-Hsun et al. (2013) miR-196a ameliorates phenotypes of Huntington disease in cell, transgenic mouse, and induced pluripotent stem cell models.; Am J Hum Genet, 93: 306-12 |
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GSE47500 |
| Cheng, Phil F et al. (2015) Methylation-dependent SOX9 expression mediates invasion in human melanoma cells and is a negative prognostic factor in advanced melanoma.; Genome Biol, 16: 42 |
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GSE57463 |
| Cheng, Qingwen et al. (2018) TREM2-activating antibodies abrogate the negative pleiotropic effects of the Alzheimer's disease variantTrem2R47Hon murine myeloid cell function.; J Biol Chem, 293: 12620-12633 |
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GSE124097 |
| Cheng, Shimei et al. (2024) Synergistic effects of repeated transcranial magnetic stimulation and mesenchymal stem cells transplantation on alleviating neuroinflammation and PANoptosis in cerebral ischemia.; J Neuroinflammation, 21: 311 |
|
GSE282396 |
| Cheng, Wei et al. (2023) Intrathecal delivery of AAV-NDNF ameliorates disease progression of ALS mice.; Mol Ther, [no vol.]: [no pages] |
|
GSE226291 |
| Cheng, Wenwen et al. (2021) NTS Prlh overcomes orexigenic stimuli and ameliorates dietary and genetic forms of obesity.; Nat Commun, 12: 5175 |
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GSE176202 |
| Cheng, Xiang et al. (2025) C1QBP forms a positive feedback loop with the PAICS/FAK/C-MYC axis to promote cancer cell proliferation.; Oncogene, 44: 4363-4376 |
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GSE308768 |
| Cheng, Yali et al. (2018) Estrogen and high-fat diet induced alterations in C57BL/6 mice endometrial transcriptome profile.; Endocr Connect, 7: 36-46 |
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GSE102103 |
| Cheng, Yi-Ting et al. (2023) Inhibitory input directs astrocyte morphogenesis through glial GABABR.; Nature, 617: 369-376 |
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GSE198632 |
| Cheng, Ying et al. (2016) LNK/SH2B3 regulates IL-7 receptor signaling in normal and malignant B-progenitors.; J Clin Invest, 126: 1267-81 |
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GSE76940 |
| Cheng, Ying et al. (2018) Partial loss of psychiatric risk gene Mir137 in mice causes repetitive behavior and impairs sociability and learning via increased Pde10a.; Nat Neurosci, 21: 1689-1703 |
|
GSE79661 |
| Cheng, Ying et al. (2018) Ten-Eleven Translocation Proteins Modulate the Response to Environmental Stress in Mice.; Cell Rep, 25: 3194-3203.e4 |
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GSE106220 |
| Cheng, Ying et al. (2023) Decoding m6A RNA methylome identifies PRMT6-regulated lipid transport promoting AML stem cell maintenance.; Cell Stem Cell, 30: 69-85.e7 |
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GSE210279 GSE210278 |
| Cheng, Yu-Che et al. (2022) Downregulated Calcium-Binding Protein S100A16 and HSP27 in Placenta-Derived Multipotent Cells Induce Functional Astrocyte Differentiation.; Stem Cell Rev Rep, 18: 839-852 |
|
GSE139656 |
| Cheng, Yung-Chih et al. (2021) Topoisomerase I inhibition and peripheral nerve injury induce DNA breaks and ATF3-associated axon regeneration in sensory neurons.; Cell Rep, 36: 109666 |
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GSE113672 |
| Cheng, Yuyan et al. (2022) Transcription factor network analysis identifies REST/NRSF as an intrinsic regulator of CNS regeneration in mice.; Nat Commun, 13: 4418 |
|
GSE141583 |
| Chennakesavalu, Mohansrinivas et al. (2024) 5-Hydroxymethylcytosine Profiling of Cell-Free DNA Identifies Bivalent Genes That Are Prognostic of Survival in High-Risk Neuroblastoma.; JCO Precis Oncol, 8: e2300297 |
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GSE212877 |
| Cheok, Meyling H et al. (2003) Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells.; Nat Genet, 34: 85-90 |
|
GSE412 |
| Cheong, Jae-Ho et al. (2011) Dual inhibition of tumor energy pathway by 2-deoxyglucose and metformin is effective against a broad spectrum of preclinical cancer models.; Mol Cancer Ther, 10: 2350-62 |
|
GSE16816 |