List of all 16,752 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Chucair-Elliott, Ana J et al. (2019) Tamoxifen induction of Cre recombinase does not cause long-lasting or sexually divergent responses in the CNS epigenome or transcriptome: implications for the design of aging studies.; Geroscience, 41: 691-708 |
|
GSE135752 |
| Chucair-Elliott, Ana J et al. (2020) Inducible cell-specific mouse models for paired epigenetic and transcriptomic studies of microglia and astroglia.; Commun Biol, 3: 693 |
|
GSE140895 GSE159106 GSE140974 |
| Chucair-Elliott, Ana J et al. (2022) Translatomic response of retinal Müller glia to acute and chronic stress.; Neurobiol Dis, 175: 105931 |
|
GSE197481 |
| Chucair-Elliott, Ana J et al. (2024) Comparative analysis of In vivo endothelial cell translatomes across central nervous system vascular beds.; Exp Eye Res, 248: 110101 |
|
GSE270200 |
| Chudnovsky, Yakov et al. (2014) ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state.; Cell Rep, 6: 313-24 |
|
GSE52363 |
| Chudzinski-Tavassi, Ana Marisa et al. (2010) A new tick Kunitz type inhibitor, Amblyomin-X, induces tumor cell death by modulating genes related to the cell cycle and targeting the ubiquitin-proteasome system.; Toxicon, 56: 1145-54 |
|
GSE18124 |
| Chui, Angela et al. (2020) Oxidative stress regulates progenitor behavior and cortical neurogenesis.; Development, 147: [no pages] |
|
GSE142684 |
| Chuikov, Sergei et al. (2010) Prdm16 promotes stem cell maintenance in multiple tissues, partly by regulating oxidative stress.; Nat Cell Biol, 12: 999-1006 |
|
GSE23406 |
| Chung, Alicia S et al. (2013) An interleukin-17-mediated paracrine network promotes tumor resistance to anti-angiogenic therapy.; Nat Med, 19: 1114-23 |
|
GSE48329 |
| Chung, Changuk et al. (2019) Early Correction of N-Methyl-D-Aspartate Receptor Function Improves Autistic-like Social Behaviors in Adult Shank2-/-Mice.; Biol Psychiatry, 85: 534-543 |
|
GSE82066 |
| Chung, Chih-Yao et al. (2021) Constitutive activation of the PI3K-Akt-mTORC1 pathway sustains the m.3243 A > G mtDNA mutation.; Nat Commun, 12: 6409 |
|
GSE175477 |
| Chung, Christine H et al. (2006) Gene expression profiles identify epithelial-to-mesenchymal transition and activation of nuclear factor-kappaB signaling as characteristics of a high-risk head and neck squamous cell carcinoma.; Cancer Res, 66: 8210-8 |
|
GSE2837 |
| Chung, Daesuk et al. (2015) Estrogen mediated epithelial proliferation in the uterus is directed by stromal Fgf10 and Bmp8a.; Mol Cell Endocrinol, 400: 48-60 |
|
GSE52399 |
| Chung, Ha-Yeun et al. (2023) Microglia mediate neurocognitive deficits by eliminating C1q-tagged synapses in sepsis-associated encephalopathy.; Sci Adv, 9: eabq7806 |
|
GSE198862 GSE198861 |
| Chung, Henry C Y et al. (2012) Human induced pluripotent stem cells derived under feeder-free conditions display unique cell cycle and DNA replication gene profiles.; Stem Cells Dev, [no vol.]: [no pages] |
|
GSE21655 |
| Chung, Hye Yoon et al. (2024) Morc2a variants cause hydroxyl radical-mediated neuropathy and are rescued by restoring GHKL ATPase.; Brain, [no vol.]: [no pages] |
|
GSE235918 |
| Chung, Jaehoon et al. (2010) Timing-dependent actions of NGF required for cell differentiation.; PLoS One, 5: e9011 |
|
GSE18016 |
| Chung, Lorinda et al. (2009) Molecular framework for response to imatinib mesylate in systemic sclerosis.; Arthritis Rheum, 60: 584-91 |
|
GSE11130 |
| Chung, Sooyoung et al. (2014) Impact of circadian nuclear receptor REV-ERB? on midbrain dopamine production and mood regulation.; Cell, 157: 858-68 |
|
GSE55119 |
| Chung, T Philip et al. (2006) Molecular diagnostics in sepsis: from bedside to bench.; J Am Coll Surg, 203: 585-598 |
|
GSE5663.1 GSE5663.2 |
| Chung, Tracy D et al. (2022) Effects of acute and chronic oxidative stress on the blood-brain barrier in 2D and 3D in vitro models.; Fluids Barriers CNS, 19: 33 |
|
GSE193887 |
| Church, Rachel J et al. (2014) A Systems Biology Approach Utilizing a Mouse Diversity Panel Identifies Genetic Differences Influencing Isoniazid-Induced Microvesicular Steatosis.; Toxicol Sci, [no vol.]: [no pages] |
|
GSE55489 |
| Churchman, Michelle L et al. (2015) Efficacy of Retinoids in IKZF1-Mutated BCR-ABL1 Acute Lymphoblastic Leukemia.; Cancer Cell, 28: 343-56 |
|
GSE68391 |
| Chuvakova, Lyubov N et al. (2021) Transcriptome of the Krushinsky-Molodkina Audiogenic Rat Strain and Identification of Possible Audiogenic Epilepsy-Associated Genes.; Front Mol Neurosci, 14: 738930 |
|
GSE173885 |
| Ci, Xinpei et al. (2018) Heterochromatin Protein 1? Mediates Development and Aggressiveness of Neuroendocrine Prostate Cancer.; Cancer Res, 78: 2691-2704 |
|
GSE105033 |
| Cibi, Dasan Mary et al. [Unknown date]Neural crest-specific deletion ofRbfox2in mice leads to craniofacial abnormalities including cleft palate.; Elife, 8: [no pages] |
|
GSE127245 |
| Cid, Elena et al. (2021) Sublayer- and cell-type-specific neurodegenerative transcriptional trajectories in hippocampal sclerosis.; Cell Rep, 35: 109229 |
|
GSE143555 |
| Ciencewicki, Jonathan M et al. (2016) Effects of mannose-binding lectin on pulmonary gene expression and innate immune inflammatory response to ozone.; Am J Physiol Lung Cell Mol Physiol, 311: L280-91 |
|
GSE68522 |
| Cilloniz, Cristian et al. (2012) Molecular signatures associated with Mx1-mediated resistance to highly pathogenic influenza virus infection: mechanisms of survival.; J Virol, 86: 2437-46 |
|
GSE35933 |
| Cimino, Daniela et al. (2008) Identification of new genes associated with breast cancer progression by gene expression analysis of predefined sets of neoplastic tissues.; Int J Cancer, 123: 1327-38 |
|
GSE9662 |
| Cimino, Irene et al. (2021) Murine neuronatin deficiency is associated with a hypervariable food intake and bimodal obesity.; Sci Rep, 11: 17571 |
|
GSE171155 |
| Cincotta, Steven A et al. (2024) Differential susceptibility of male and female germ cells to glucocorticoid-mediated signaling.; Elife, 12: [no pages] |
|
GSE234672 GSE234674 GSE234663 |
| Cinkornpumin, Jessica K et al. (2024) Hypoxia and loss ofGCM1expression prevents differentiation and contact inhibition in human trophoblast stem cells.; bioRxiv, [no vol.]: [no pages] |
|
GSE276595 GSE276594 |
| Cioni, Bianca et al. (2023) JMJD6 Shapes a Pro-tumor Microenvironment via ANXA1-Dependent Macrophage Polarization in Breast Cancer.; Mol Cancer Res, 21: 614-627 |
|
GSE216234 GSE216235 |
| Cipolletta, Daniela et al. (2012) PPAR-? is a major driver of the accumulation and phenotype of adipose tissue Treg cells.; Nature, 486: 549-53 |
|
GSE37532 |
| Cirilo, Priscila Daniele Ramos et al. (2013) An integrative genomic and transcriptomic analysis reveals potential targets associated with cell proliferation in uterine leiomyomas.; PLoS One, 8: e57901 |
|
GSE42939 |
| Cirnaru, Maria-Daniela et al. (2021) Striatal Cholinergic Dysregulation after Neonatal Decrease in X-Linked Dystonia Parkinsonism-Related TAF1 Isoforms.; Mov Disord, 36: 2780-2794 |
|
GSE178224.2 GSE178224.1 |
| Cirnaru, Maria-Daniela et al. (2021) Unbiased identification of novel transcription factors in striatal compartmentation and striosome maturation.; Elife, 10: [no pages] |
|
GSE143276 |
| Cirrincione, Anthony M et al. (2022) Longitudinal RNA Sequencing of Skin and DRG Neurons in Mice with Paclitaxel-Induced Peripheral Neuropathy.; Data (Basel), 7: [no pages] |
|
GSE185084 |
| Citrin, Deborah E et al. (2013) Role of Type II Pneumocyte Senescence in Radiation-Induced Lung Fibrosis.; J Natl Cancer Inst, 105: 1474-84 |
|
GSE41789 |
| Ciudad-Roberts, Andrés et al. (2015) Alcohol enhances the psychostimulant and conditioning effects of mephedrone in adolescent mice; postulation of unique roles of D3 receptors and BDNF in place preference acquisition.; Br J Pharmacol, 172: 4970-84 |
|
GSE58279 |
| Ciuffoli, Veronica et al. (2024) Psat1-generated α-ketoglutarate and glutamine promote muscle stem cell activation and regeneration.; Genes Dev, 38: 151-167 |
|
GSE248911 GSE248913 |
| Ciurkiewicz, Malgorzata et al. (2021) Transcriptome analysis following neurotropic virus infection reveals faulty innate immunity and delayed antigen presentation in mice susceptible to virus-induced demyelination.; Brain Pathol, 31: e13000 |
|
GSE159226 |
| Cizkova, Magdalena et al. (2010) Gene expression profiling reveals new aspects of PIK3CA mutation in ERalpha-positive breast cancer: major implication of the Wnt signaling pathway.; PLoS One, 5: e15647 |
|
GSE22035 |
| Claes, Marie et al. (2022) Chronic Chemogenetic Activation of the Superior Colliculus in Glaucomatous Mice: Local and Retrograde Molecular Signature.; Cells, 11: [no pages] |
|
GSE202012 |
| Claeys, Wouter et al. (2023) Experimental hepatic encephalopathy causes early but sustained glial transcriptional changes.; J Neuroinflammation, 20: 130 |
|
GSE230287 |
| Clamer, Massimiliano et al. (2018) Active Ribosome Profiling with RiboLace.; Cell Rep, 25: 1097-1108.e5 |
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GSE112295 |
| Clancy, Hailey A et al. (2012) Gene expression changes in human lung cells exposed to arsenic, chromium, nickel or vanadium indicate the first steps in cancer.; Metallomics, 4: 784-93 |
|
GSE36684 |
| Clare, Alison J et al. (2017) RNA-Sequencing Analysis Reveals a Regulatory Role for Transcription FactorFezf2in the Mature Motor Cortex.; Front Mol Neurosci, 10: 283 |
|
GSE102365 |
| Clare, Alison J et al. (2018) Transcriptome Profiling of Layer 5 Intratelencephalic Projection Neurons From the Mature Mouse Motor Cortex.; Front Mol Neurosci, 11: 410 |
|
GSE107586 |
| Clark, Alex J et al. (2021) An iPSC model of hereditary sensory neuropathy-1 reveals L-serine-responsive deficits in neuronal ganglioside composition and axoglial interactions.; Cell Rep Med, 2: 100345 |
|
GSE144208 |
| Clark, Danielle N et al. (2023) Prolonged STAT1 activation in neurons drives a pathological transcriptional response.; J Neuroimmunol, 382: 578168 |
|
GSE232304 |
| Clark, Erin A et al. (2020) Cortical RORβ is required for layer 4 transcriptional identity and barrel integrity.; Elife, 9: [no pages] |
|
GSE138001 |
| Clark, Iain C et al. (2021) Barcoded viral tracing of single-cell interactions in central nervous system inflammation.; Science, 372: [no pages] |
|
GSE149052 GSE149105 |
| Clark, Sean C et al. (2020) Differential nucleosome spacing in neurons and glia.; Neurosci Lett, 714: 134559 |
|
GSE133745 |
| Clark, Victoria E et al. (2013) Genomic analysis of non-NF2 meningiomas reveals mutations in TRAF7, KLF4, AKT1, and SMO.; Science, 339: 1077-80 |
|
GSE58037 |
| Clarke, Colin et al. (2013) Correlating transcriptional networks to breast cancer survival: a large-scale coexpression analysis.; Carcinogenesis, 34: 2300-8 |
|
GSE42568 |
| Clarke, Jelani et al. (2020) Vitamin D Regulates MerTK-Dependent Phagocytosis in Human Myeloid Cells.; J Immunol, 205: 398-406 |
|
GSE148986 |
| Clarke, Penny et al. (2014) Virus-induced transcriptional changes in the brain include the differential expression of genes associated with interferon, apoptosis, interleukin 17 receptor A, and glutamate signaling as well as flavivirus-specific upregulation of tRNA synthetases.; MBio, 5: e00902-14 |
|
GSE53784 |
| Clarkson, Benjamin Ds et al. (2023) CD8+ T cells recognizing a neuron-restricted antigen injure axons in a model of multiple sclerosis.; J Clin Invest, 133: [no pages] |
|
GSE241781 |
| Classen, Sabine et al. (2010) Application of T cell-based transcriptomics to identify three candidate biomarkers for monitoring anti-TGFbetaR therapy.; Pharmacogenet Genomics, 20: 147-56 |
|
GSE15468 |
| Claus, Elizabeth B et al. (2008) Specific genes expressed in association with progesterone receptors in meningioma.; Cancer Res, 68: 314-22 |
|
GSE9438 |
| Clayberger, Carol et al. (2012) 15 kDa granulysin causes differentiation of monocytes to dendritic cells but lacks cytotoxic activity.; J Immunol, 188: 6119-26 |
|
GSE35304 |
| Clayton, Benjamin L L et al. (2024) A phenotypic screening platform for identifying chemical modulators of astrocyte reactivity.; Nat Neurosci, 27: 656-665 |
|
GSE230817 GSE185212 |
| Clelland, Catherine L et al. (2013) Utilization of never-medicated bipolar disorder patients towards development and validation of a peripheral biomarker profile.; PLoS One, 8: e69082 |
|
GSE46449 |
| Clemens, Adam W et al. [Unknown date]MeCP2 Represses Enhancers through Chromosome Topology-Associated DNA Methylation.; Mol Cell, 77: 279-293.e8 |
|
GSE123372 |
| Clement, Tracy M et al. (2010) Alterations in the developing testis transcriptome following embryonic vinclozolin exposure.; Reprod Toxicol, 30: 353-64 |
|
GSE20245 |
| Clements, Meghan et al. (2016) Differential Ly6C Expression after Renal Ischemia-Reperfusion Identifies Unique Macrophage Populations.; J Am Soc Nephrol, 27: 159-70 |
|
GSE75808 |
| Clements, Melanie P et al. (2017) The Wound Microenvironment Reprograms Schwann Cells to Invasive Mesenchymal-like Cells to Drive Peripheral Nerve Regeneration.; Neuron, 96: 98-114.e7 |
|
GSE103039.2 GSE103039.1 |
| Clemmensen, Anders et al. (2010) Genome-wide expression analysis of human in vivo irritated epidermis: differential profiles induced by sodium lauryl sulfate and nonanoic acid.; J Invest Dermatol, 130: 2201-10 |
|
GSE18206 |
| Clerch, Linda Biadasz et al. (2004) DNA microarray analysis of neonatal mouse lung connects regulation of KDR with dexamethasone-induced inhibition of alveolar formation.; Am J Physiol Lung Cell Mol Physiol, 286: L411-9 |
|
GSE484 |
| Cleverley, Tesia L et al. (2023) The host-directed therapeutic imatinib mesylate accelerates immune responses to Mycobacterium marinum infection and limits pathology associated with granulomas.; PLoS Pathog, 19: e1011387 |
|
GSE215176 |
| Clewell, H J et al. (2011) Concentration- and time-dependent genomic changes in the mouse urinary bladder following exposure to arsenate in drinking water for up to 12 weeks.; Toxicol Sci, 123: 421-32 |
|
GSE32102 |
| Cliff, Jacqueline M et al. (2013) Distinct phases of blood gene expression pattern through tuberculosis treatment reflect modulation of the humoral immune response.; J Infect Dis, [no vol.]: [no pages] |
|
GSE31348 GSE36238 |
| Clifford, Harry et al. (2019) A gene expression signature in developing Purkinje cells predicts autism and intellectual disability co-morbidity status.; Sci Rep, 9: 485 |
|
GSE86824 |
| Clifton, Nicholas E et al. (2022) Developmental disruption to the cortical transcriptome and synaptosome in a model of SETD1A loss-of-function.; Hum Mol Genet, 31: 3095-3106 |
|
GSE199428 |
| Clinton, Sarah M et al. (2011) Developmental underpinnings of differences in rodent novelty-seeking and emotional reactivity.; Eur J Neurosci, 34: 994-1005 |
|
GSE29552 |
| Clodfelter, Karl H et al. (2007) Role of STAT5a in regulation of sex-specific gene expression in female but not male mouse liver revealed by microarray analysis.; Physiol Genomics, 31: 63-74 |
|
GSE7169 |
| Close, Jennie L et al. (2017) Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation.; Neuron, 93: 1035-1048.e5 |
|
GSE93801 |
| Clouaire, Thomas et al. (2014) Cfp1 is required for gene expression-dependent H3K4 trimethylation and H3K9 acetylation in embryonic stem cells.; Genome Biol, 15: 451 |
|
GSE53489 |
| Clovis, Yoanne M et al. (2012) Convergent repression of Foxp2 3'UTR by miR-9 and miR-132 in embryonic mouse neocortex: implications for radial migration of neurons.; Development, 139: 3332-42 |
|
GSE37610 |
| Clovis, Yoanne M et al. [Unknown date]Chx10 Consolidates V2a Interneuron Identity through Two Distinct Gene Repression Modes.; Cell Rep, 16: 1642-1652 |
|
GSE83874 |
| Clément, Karine et al. (2002) In vivo regulation of human skeletal muscle gene expression by thyroid hormone.; Genome Res, 12: 281-91 |
|
GSE4345 |
| Clément-Ziza, Mathieu et al. (2009) Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling.; BMC Genomics, 10: 246 |
|
GSE15398 |
| Coarfa, Christian et al. (2018) Influence of the neural microenvironment on prostate cancer.; Prostate, 78: 128-139 |
|
GSE28717 |
| Cízková, Alena et al. (2008) TMEM70 mutations cause isolated ATP synthase deficiency and neonatal mitochondrial encephalocardiomyopathy.; Nat Genet, 40: 1288-90 |
|
GSE10956 |