List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Chawla, Lakhmir S et al. (2016) Acute appendicitis: transcript profiling of blood identifies promising biomarkers and potential underlying processes.; BMC Med Genomics, 9: 40 |
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GSE83091 |
| Chaya, Taro et al. (2021) Deficiency of the neurodevelopmental disorder-associated gene Cyfip2 alters the retinal ganglion cell properties and visual acuity.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE176528 |
| Chaya, Taro et al. (2022) Multiple knockout mouse and embryonic stem cell models reveal the role of miR-124a in neuronal maturation.; J Biol Chem, 298: 102293 |
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GSE196356 |
| Cheadle, Chris et al. (2010) Transcription of proteinase 3 and related myelopoiesis genes in peripheral blood mononuclear cells of patients with active Wegener's granulomatosis.; Arthritis Rheum, 62: 1744-54 |
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GSE18885 |
| Cheadle, Chris et al. (2012) Erythroid-specific transcriptional changes in PBMCs from pulmonary hypertension patients.; PLoS One, 7: e34951 |
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GSE33463 |
| Cheadle, Lucas et al. (2018) Visual Experience-Dependent Expression of Fn14 Is Required for Retinogeniculate Refinement.; Neuron, 99: 525-539.e10 |
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GSE117021 GSE117022 GSE117023 |
| Cheah, Menghon et al. (2023) Integrin-Driven Axon Regeneration in the Spinal Cord Activates a Distinctive CNS Regeneration Program.; J Neurosci, 43: 4775-4794 |
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GSE188776 GSE188775 |
| Checa, Marco et al. (2016) Cigarette Smoke Enhances the Expression of Profibrotic Molecules in Alveolar Epithelial Cells.; PLoS One, 11: e0150383 |
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GSE77942 |
| Chechlinska, Magdalena et al. (2009) Molecular signature of cell cycle exit induced in human T lymphoblasts by IL-2 withdrawal.; BMC Genomics, 10: 261 |
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GSE13909 |
| Cheffer, Arquimedes et al. (2023) DOT1L deletion impairs the development of cortical parvalbumin-expressing interneurons.; Cereb Cortex, 33: 10272-10285 |
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GSE221994 |
| Chelladurai, Maharrish et al. (2025) A heterodimer of hemoglobin identifies theranostic targets on brain-metastasizing melanoma cells.; Int J Cancer, 157: 773-787 |
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GSE278118 |
| Chelmicki, Tomasz et al. (2014) MOF-associated complexes ensure stem cell identity and Xist repression.; Elife, 3: e02024 |
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GSE57698 |
| Cheloufi, Sihem et al. (2015) The histone chaperone CAF-1 safeguards somatic cell identity.; Nature, 528: 218-24 |
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GSE72744 |
| Chembazhi, Ullas Valiya et al. (2023) PTBP1 controls intestinal epithelial regeneration through post-transcriptional regulation of gene expression.; Nucleic Acids Res, [no vol.]: [no pages] |
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GSE185499 |
| Chemello, Francesco et al. (2023) Dysfunctional mitochondria accumulate in a skeletal muscle knockout model of Smn1, the causal gene of spinal muscular atrophy.; Cell Death Dis, 14: 162 |
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GSE207890 |
| Chen, Alexander et al. (2025) IRX2 and NPTX1 differential regulation of β-catenin underlies MEK-mediated proliferation in human neuroglial cells.; Genes Dev, 39: 697-705 |
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GSE282456 |
| Chen, An-Jou et al. (2012) STAR RNA-binding protein Quaking suppresses cancer via stabilization of specific miRNA.; Genes Dev, 26: 1459-72 |
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GSE19687 |
| Chen, Bo et al. (2024) Plexin D1 emerges as a novel target in the development of neural lineage plasticity in treatment-resistant prostate cancer.; Oncogene, 43: 2325-2337 |
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GSE267961 |
| Chen, C et al. (2012) Two gene co-expression modules differentiate psychotics and controls.; Mol Psychiatry, [no vol.]: [no pages] |
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GSE35974 GSE35977 |
| Chen, Can et al. (2013) Inhibition of neuronal nitric oxide synthase activity promotes migration of human-induced pluripotent stem cell-derived neural stem cells toward cancer cells.; J Neurochem, 126: 318-30 |
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GSE40750 GSE40749 |
| Chen, Carissa et al. (2024) Trans-omic profiling uncovers molecular controls of early human cerebral organoid formation.; Cell Rep, 43: 114219 |
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GSE248901 |
| Chen, Changmin et al. (2013) Differential disruption of EWS-FLI1 binding by DNA-binding agents.; PLoS One, 8: e69714 |
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GSE45414 |
| Chen, Charlie D et al. (2004) Molecular determinants of resistance to antiandrogen therapy.; Nat Med, 10: 33-9 |
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GSE846 |
| Chen, Chiachen et al. (2025) Regulation ofINSM1Gene Expression and Neuroendocrine Differentiation in High-Risk Neuroblastoma.; Biology (Basel), 15: [no pages] |
|
GSE312485 |
| Chen, Chien-Wen et al. (2025) Plasticity of the mammalian integrated stress response.; Nature, 641: 1319-1328 |
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GSE268130 GSE268127 GSE268132 |
| Chen, Chih-Ying et al. (2022) Galnt17 loss-of-function leads to developmental delay and abnormal coordination, activity, and social interactions with cerebellar vermis pathology.; Dev Biol, 490: 155-171 |
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GSE180040 |
| Chen, Chin et al. (2012) Expression profiling identifies novel gene targets and functions for Pdx1 in the duodenum of mature mice.; Am J Physiol Gastrointest Liver Physiol, 302: G407-19 |
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GSE29048 |
| Chen, Cho-Yi et al. (2016) Effects of aging on circadian patterns of gene expression in the human prefrontal cortex.; Proc Natl Acad Sci U S A, 113: 206-11 |
|
GSE71620 |
| Chen, Chu et al. (2008) Gene expression profiling identifies genes predictive of oral squamous cell carcinoma.; Cancer Epidemiol Biomarkers Prev, 17: 2152-62 |
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GSE30784 |
| Chen, Chun-An et al. (2019) Nr2f1 heterozygous knockout mice recapitulate neurological phenotypes of Bosch-Boonstra-Schaaf optic atrophy syndrome and show impaired hippocampal synaptic plasticity.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE106302 |
| Chen, Ci-Di et al. (2015) The anti-aging and tumor suppressor protein Klotho enhances differentiation of a human oligodendrocytic hybrid cell line.; J Mol Neurosci, 55: 76-90 |
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GSE51536 |
| Chen, Dan et al. (2023) CTLA-4 blockade induces a microglia-Th1 cell partnership that stimulates microglia phagocytosis and anti-tumor function in glioblastoma.; Immunity, 56: 2086-2104.e8 |
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GSE233971 |
| Chen, Dan et al. (2025) Mettl14 and Mettl3 Work Cooperatively to Regulate Retinal Development.; Cell Biochem Funct, 43: e70039 |
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GSE282032 |
| Chen, Di et al. (2018) Influence of lipopolysaccharide on proinflammatory gene expression in human corneal, conjunctival and meibomian gland epithelial cells.; Ocul Surf, 16: 382-389 |
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GSE111496 |
| Chen, Dung-Tsa et al. (2010) Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue.; Breast Cancer Res Treat, 119: 335-46 |
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GSE10780 |
| Chen, E et al. (2009) Genome-wide transcriptional profiling linked to social class in asthma.; Thorax, 64: 38-43 |
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GSE7894 |
| Chen, Fan et al. (2023) Polycomb deficiency drives a FOXP2-high aggressive state targetable by epigenetic inhibitors.; Nat Commun, 14: 336 |
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GSE154689.2 GSE154689.1 |
| Chen, Fang et al. (2011) Proinflammatory caspase-2-mediated macrophage cell death induced by a rough attenuated Brucella suis strain.; Infect Immun, 79: 2460-9 |
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GSE21117 |
| Chen, Fangbin et al. (2025) DDX24 spatiotemporally orchestrates VEGF and Wnt signaling during developmental angiogenesis.; Proc Natl Acad Sci U S A, 122: e2417445122 |
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GSE185261 |
| Chen, Feng et al. (2010) Genes related to the very early stage of ConA-induced fulminant hepatitis: a gene-chip-based study in a mouse model.; BMC Genomics, 11: 240 |
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GSE17184 |
| Chen, Fengrong et al. (2022) Quercetin Mitigates Methamphetamine-Induced Anxiety-Like Behavior Through Ameliorating Mitochondrial Dysfunction and Neuroinflammation.; Front Mol Neurosci, 15: 829886 |
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GSE193829 |
| Chen, Gang et al. (2010) Foxa2 programs Th2 cell-mediated innate immunity in the developing lung.; J Immunol, 184: 6133-41 |
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GSE19204 |
| Chen, Gang et al. (2013) Characterization of a novel CRAC inhibitor that potently blocks human T cell activation and effector functions.; Mol Immunol, 54: 355-67 |
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GSE43210 |
| Chen, Gaowei et al. (2023) Distinct reward processing by subregions of the nucleus accumbens.; Cell Rep, 42: 112069 |
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GSE222274 |
| Chen, Guiqin et al. (2017) Antidyskinetic Effects of MEK Inhibitor Are Associated with Multiple Neurochemical Alterations in the Striatum of Hemiparkinsonian Rats.; Front Neurosci, 11: 112 |
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GSE93695 |
| Chen, Guo et al. (2014) Molecular profiling of patient-matched brain and extracranial melanoma metastases implicates the PI3K pathway as a therapeutic target.; Clin Cancer Res, 20: 5537-46 |
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GSE50493 |
| Chen, Guo-Yan et al. (2020) Mediator Med23 Regulates Adult Hippocampal Neurogenesis.; Front Cell Dev Biol, 8: 699 |
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GSE152113 |
| Chen, Han et al. (2025) Intermittent fasting triggers interorgan communication to suppress hair follicle regeneration.; Cell, 188: 157-174.e22 |
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GSE246952 |
| Chen, Hao et al. (2012) Transcript profiling identifies dynamic gene expression patterns and an important role for Nrf2/Keap1 pathway in the developing mouse esophagus.; PLoS One, 7: e36504 |
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GSE34278 |
| Chen, Hao et al. (2019) Using a Multi-Stage hESC Model to Characterize BDE-47 Toxicity during Neurogenesis.; Toxicol Sci, [no vol.]: [no pages] |
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GSE123458 |
| Chen, Hao et al. (2025) DAP12 deletion reduces neuronal SLIT2 and demyelination and enhances brain resilience in female tauopathy mice.; Mol Neurodegener, 20: 124 |
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GSE246090 |
| Chen, Haobin et al. (2023) BET Inhibitors Target the SCLC-N Subtype of Small-Cell Lung Cancer by Blocking NEUROD1 Transactivation.; Mol Cancer Res, 21: 91-101 |
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GSE210101 |
| Chen, Ho-Chung et al. (2026) UTX coordinates TCF1 and STAT3 to control progenitor CD8+ T cell fate in autoimmune diabetes.; J Clin Invest, 136: [no pages] |
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GSE283268 |
| Chen, Holly Y et al. (2023) Reserpine maintains photoreceptor survival in retinal ciliopathy by resolving proteostasis imbalance and ciliogenesis defects.; Elife, 12: [no pages] |
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GSE206959 |
| Chen, Hongjin et al. (2023) Multi-omics analysis revealed the role of CYP1A2 in the induction of mechanical allodynia in type 1 diabetes.; Front Genet, 14: 1151340 |
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GSE226315 |
| Chen, Hongwei et al. (2015) Reinforcement of STAT3 activity reprogrammes human embryonic stem cells to naive-like pluripotency.; Nat Commun, 6: 7095 |
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GSE55708 |
| Chen, Hsiao-Chi et al. (2024) Histone serotonylation regulates ependymoma tumorigenesis.; Nature, 632: 903-910 |
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GSE246031 |
| Chen, Hsin-Fu et al. (2015) Characteristic expression of major histocompatibility complex and immune privilege genes in human pluripotent stem cells and their derivatives.; Cell Transplant, 24: 845-64 |
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GSE28406 |
| Chen, Hsu-Hsin et al. (2014) DAZL limits pluripotency, differentiation, and apoptosis in developing primordial germ cells.; Stem Cell Reports, 3: 892-904 |
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GSE39546 |
| Chen, Hui-Wen et al. (2024) Imbalance inUnc80RNA Editing Disrupts Dynamic Neuronal Activity and Olfactory Perception.; Int J Mol Sci, 25: [no pages] |
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GSE269152 |
| Chen, Huiyi et al. (2008) The aged retinal pigment epithelium/choroid: a potential substratum for the pathogenesis of age-related macular degeneration.; PLoS One, 3: e2339 |
|
GSE10965 |
| Chen, Jasmine et al. (2021) Lineage-restricted neoplasia driven by Myc defaults to small cell lung cancer when combined with loss of p53 and Rb in the airway epithelium.; Oncogene, [no vol.]: [no pages] |
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GSE161185 |
| Chen, Jefferson K et al. (2023) IRX5 promotes DNA damage repair and activation of hair follicle stem cells.; Stem Cell Reports, [no vol.]: [no pages] |
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GSE202086 GSE202075 |
| Chen, Jennifer Y et al. (2017) Tricyclic Antidepressants Promote Ceramide Accumulation to Regulate Collagen Production in Human Hepatic Stellate Cells.; Sci Rep, 7: 44867 |
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GSE78853 |
| Chen, Jessie et al. (2018) BMP-Responsive Protease HtrA1 Is Differentially Expressed in Astrocytes and Regulates Astrocytic Development and Injury Response.; J Neurosci, 38: 3840-3857 |
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GSE67942 |
| Chen, Jessy et al. (2021) CaM Kinase II-δ Is Required for Diabetic Hyperglycemia and Retinopathy but Not Nephropathy.; Diabetes, 70: 616-626 |
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GSE157739 |
| Chen, Jian et al. (2013) Transcriptome comparison of human neurons generated using induced pluripotent stem cells derived from dental pulp and skin fibroblasts.; PLoS One, 8: e75682 |
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GSE43143 |
| Chen, Jian et al. (2015) ZNF804A Transcriptional Networks in Differentiating Neurons Derived from Induced Pluripotent Stem Cells of Human Origin.; PLoS One, 10: e0124597 |
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GSE54112 |
| Chen, Jian et al. (2018) AXL promotes Zika virus infection in astrocytes by antagonizing type I interferon signalling.; Nat Microbiol, 3: 302-309 |
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GSE106545 |
| Chen, Jiayang et al. (2021) A MYT1L syndrome mouse model recapitulates patient phenotypes and reveals altered brain development due to disrupted neuronal maturation.; Neuron, 109: 3775-3792.e14 |
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GSE173926 |
| Chen, Jichao et al. (2007) Estrogen-related receptor beta/NR3B2 controls epithelial cell fate and endolymph production by the stria vascularis.; Dev Cell, 13: 325-37 |
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GSE8434 |
| Chen, Jie et al. (2019) Acupuncture Treatment Reverses Retinal Gene Expression Induced by Optic Nerve Injury via RNA Sequencing Analysis.; Front Integr Neurosci, 13: 59 |
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GSE131486 |
| Chen, Jie et al. (2020) Cell Cycle Checkpoints Cooperate to Suppress DNA- and RNA-Associated Molecular Pattern Recognition and Anti-Tumor Immune Responses.; Cell Rep, 32: 108080 |
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GSE145148.1 GSE145148.3 GSE145148.2 |
| Chen, Jie et al. (2020) Effects of Retinal Transcription Regulation After GB20 Needling Treatment in Retina With Optic Neuritis.; Front Integr Neurosci, 14: 568449 |
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GSE148759 |
| Chen, Jie et al. (2025) Non-canonical hepatic androgen receptor mediates glucagon sensitivity in female mice through the PGC1α/ERRα/mitochondria axis.; Cell Rep, 44: 115188 |
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GSE236551 |
| Chen, Jing et al. (2012) Retinal expression of Wnt-pathway mediated genes in low-density lipoprotein receptor-related protein 5 (Lrp5) knockout mice.; PLoS One, 7: e30203 |
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GSE32145 |
| Chen, Jing et al. (2017) Cytokine receptor signaling is required for the survival of ALK- anaplastic large cell lymphoma, even in the presence of JAK1/STAT3 mutations.; Proc Natl Acad Sci U S A, 114: 3975-3980 |
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GSE96048 |
| Chen, Jing et al. (2018) In utero gene expression in the Slc39a8(neo/neo) knockdown mouse.; Sci Rep, 8: 10703 |
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GSE111080 |
| Chen, Jing et al. (2026) Transcription factor Maf promotes expression of repressor Zeb2 to drive microglia development in primitive hematopoiesis.; Immunity, 59: 48-59.e5 |
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GSE283975 |
| Chen, Jinlong et al. (2020) Naloxone regulates the differentiation of neural stem cells via a receptor-independent pathway.; FASEB J, 34: 5917-5930 |
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GSE106263 |
| Chen, Jiwang et al. (2013) Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: A Mouse MRSA Pneumonia Model.; PLoS One, 8: e67994 |
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GSE46071 |
| Chen, Jocelyn F et al. (2025) An in vivo screen identifies NAT10 as a master regulator of brain metastasis.; Sci Adv, 11: eads6021 |
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GSE269160 |
| Chen, Julia Ling-Yu et al. (2008) The genomic analysis of lactic acidosis and acidosis response in human cancers.; PLoS Genet, 4: e1000293 |
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GSE9649 |
| Chen, Jun et al. (2016) Hierarchical Oct4 Binding in Concert with Primed Epigenetic Rearrangements during Somatic Cell Reprogramming.; Cell Rep, 14: 1540-1554 |
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GSE67462 |
| Chen, Justin et al. (2015) The genetics of splicing in neuroblastoma.; Cancer Discov, 5: 380-95 |
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GSE55248 |
| Chen, Kai et al. (2025) Enhancing TREM2 expression activates microglia and modestly mitigates tau pathology and neurodegeneration.; J Neuroinflammation, 22: 93 |
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GSE285713 |
| Chen, Ke Yun et al. (2021) Adipocyte-Specific Ablation of PU.1 Promotes Energy Expenditure and Ameliorates Metabolic Syndrome in Aging Mice.; Front Aging, 2: 803482 |
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GSE188497 |
| Chen, Kelan et al. (2015) Genome-wide binding and mechanistic analyses of Smchd1-mediated epigenetic regulation.; Proc Natl Acad Sci U S A, 112: E3535-44 |
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GSE65747 |
| Chen, Kenian et al. (2013) RNA-seq characterization of spinal cord injury transcriptome in acute/subacute phases: a resource for understanding the pathology at the systems level.; PLoS One, 8: e72567 |
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GSE45376 |