List of all 16,756 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Coppola, Giovanni et al. (2009) Functional genomic analysis of frataxin deficiency reveals tissue-specific alterations and identifies the PPARgamma pathway as a therapeutic target in Friedreich's ataxia.; Hum Mol Genet, 18: 2452-61 |
|
GSE15848 |
| Corbet, Andrea K et al. (2023) G0S2 promotes antiestrogenic and pro-migratory responses in ER+ and ER- breast cancer cells.; Transl Oncol, 33: 101676 |
|
GSE227698 |
| Corbett, Sean E et al. (2019) Gene Expression Alterations in the Bronchial Epithelium of e-Cigarette Users.; Chest, 156: 764-773 |
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GSE112073 |
| Corchete, Luis A et al. (2020) Systematic comparison and assessment of RNA-seq procedures for gene expression quantitative analysis.; Sci Rep, 10: 19737 |
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GSE95077 |
| Cordeaux, Yolande et al. (2010) Effects of medroxyprogesterone acetate on gene expression in myometrial explants from pregnant women.; J Clin Endocrinol Metab, 95: E437-47 |
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GSE22961 |
| Cordonnier, Gaëlle et al. [Unknown date]CBF?-SMMHC Affects Genome-wide Polycomb Repressive Complex 1 Activity in Acute Myeloid Leukemia.; Cell Rep, 30: 299-307.e3 |
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GSE128771 |
| Corley, Susan M et al. [Unknown date]RNA-Seq analysis of Gtf2ird1 knockout epidermal tissue provides potential insights into molecular mechanisms underpinning Williams-Beuren syndrome.; BMC Genomics, 17: 450 |
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GSE81082 |
| Cornils, Hauke et al. (2010) Ablation of the kinase NDR1 predisposes mice to the development of T cell lymphoma.; Sci Signal, 3: ra47 |
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GSE21902 |
| Cornish, E Jean et al. (2008) Reduced nicotinamide adenine dinucleotide phosphate oxidase-independent resistance to Aspergillus fumigatus in alveolar macrophages.; J Immunol, 180: 6854-67 |
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GSE8997 |
| Corno, Daniela et al. (2012) Gene signatures associated with mouse postnatal hindbrain neural stem cells and medulloblastoma cancer stem cells identify novel molecular mediators and predict human medulloblastoma molecular classification.; Cancer Discov, 2: 554-68 |
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GSE37316 |
| Coronado, Michael J et al. (2012) Testosterone and interleukin-1? increase cardiac remodeling during coxsackievirus B3 myocarditis via serpin A 3n.; Am J Physiol Heart Circ Physiol, 302: H1726-36 |
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GSE35182 |
| Coronel, Raquel et al. (2023) Amyloid Precursor Protein (APP) Regulates Gliogenesis and Neurogenesis of Human Neural Stem Cells by Several Signaling Pathways.; Int J Mol Sci, 24: [no pages] |
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GSE233651 |
| Corradini, Beatriz Raposo et al. (2014) Complex network-driven view of genomic mechanisms underlying Parkinson's disease: analyses in dorsal motor vagal nucleus, locus coeruleus, and substantia nigra.; Biomed Res Int, 2014: 543673 |
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GSE43490 |
| Corrales, Eyleen et al. (2022) PI3K/AKT signaling allows for MAPK/ERK pathway independency mediating dedifferentiation-driven treatment resistance in melanoma.; Cell Commun Signal, 20: 187 |
|
GSE208004 |
| Correa Pinto Junior, Danilo et al. (2024) Osteocalcin of maternal and embryonic origins synergize to establish homeostasis in offspring.; EMBO Rep, 25: 593-615 |
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GSE248211 |
| Correa, Stephanie M et al. (2015) An estrogen-responsive module in the ventromedial hypothalamus selectively drives sex-specific activity in females.; Cell Rep, 10: 62-74 |
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GSE63656 |
| Correa-Costa, Matheus et al. (2012) Transcriptome analysis of renal ischemia/reperfusion injury and its modulation by ischemic pre-conditioning or hemin treatment.; PLoS One, 7: e49569 |
|
GSE39548 |
| Correa-Macedo, Wilian et al. (2024) Transcriptome immune-regulatory differences between leprosy patients and type 1 reaction patients, before onset of symptoms.; PLoS Negl Trop Dis, 18: e0011866 |
|
GSE269151 |
| Correia, Jorge C et al. (2021) Muscle-secreted neurturin couples myofiber oxidative metabolism and slow motor neuron identity.; Cell Metab, 33: 2215-2230.e8 |
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GSE180266 GSE155068 |
| Correia, Jorge C et al. (2023) Zfp697 is an RNA-binding protein that regulates skeletal muscle inflammation and regeneration.; bioRxiv, [no vol.]: [no pages] |
|
GSE273093 |
| Corsello, Steven M et al. (2020) Discovering the anti-cancer potential of non-oncology drugs by systematic viability profiling.; Nat Cancer, 1: 235-248 |
|
GSE133285 |
| Corsi, Giulia I et al. (2022) The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression.; Neurobiol Dis, 178: 105980 |
|
GSE211993 |
| Corsini, Nina S et al. (2009) The death receptor CD95 activates adult neural stem cells for working memory formation and brain repair.; Cell Stem Cell, 5: 178-90 |
|
GSE15623 |
| Corso-Díaz, Ximena et al. (2020) Genome-wide Profiling Identifies DNA Methylation Signatures of Aging in Rod Photoreceptors Associated with Alterations in Energy Metabolism.; Cell Rep, 31: 107525 |
|
GSE134871 |
| Cortes, Daniel E et al. (2024) An in vitro neurogenetics platform for precision disease modeling in the mouse.; Sci Adv, 10: eadj9305 |
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GSE194402 |
| Cortez, Diego et al. (2014) Origins and functional evolution of Y chromosomes across mammals.; Nature, 508: 488-93 |
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GSE50747.4 |
| Corti, Stefania et al. (2006) Transplanted ALDHhiSSClo neural stem cells generate motor neurons and delay disease progression of nmd mice, an animal model of SMARD1.; Hum Mol Genet, 15: 167-87 |
|
GSE3075 |
| Corti, Stefania et al. (2008) Neural stem cell transplantation can ameliorate the phenotype of a mouse model of spinal muscular atrophy.; J Clin Invest, 118: 3316-30 |
|
GSE10224 |
| Corti, Stefania et al. (2012) Genetic correction of human induced pluripotent stem cells from patients with spinal muscular atrophy.; Sci Transl Med, 4: 165ra162 |
|
GSE27206 GSE27205 |
| Cortés-Malagón, Enoc M et al. (2013) Gene expression profile regulated by the HPV16 E7 oncoprotein and estradiol in cervical tissue.; Virology, 447: 155-65 |
|
GSE46890 |
| Corvol, Jean-Christophe et al. (2008) Abrogation of T cell quiescence characterizes patients at high risk for multiple sclerosis after the initial neurological event.; Proc Natl Acad Sci U S A, 105: 11839-44 |
|
GSE13732 |
| Coser, Kathryn R et al. (2003) Global analysis of ligand sensitivity of estrogen inducible and suppressible genes in MCF7/BUS breast cancer cells by DNA microarray.; Proc Natl Acad Sci U S A, 100: 13994-9 |
|
GSE4668 |
| Coser, Kathryn R et al. (2009) Antiestrogen-resistant subclones of MCF-7 human breast cancer cells are derived from a common monoclonal drug-resistant progenitor.; Proc Natl Acad Sci U S A, 106: 14536-41 |
|
GSE14986 |
| Cossec, Jack-Christophe et al. (2023) Transient suppression of SUMOylation in embryonic stem cells generates embryo-like structures.; Cell Rep, 42: 112380 |
|
GSE180676 |
| Cossetti, Chiara et al. (2014) Extracellular vesicles from neural stem cells transfer IFN-? via Ifngr1 to activate Stat1 signaling in target cells.; Mol Cell, 56: 193-204 |
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GSE33527 |
| Costa, Bruno M et al. (2010) Reversing HOXA9 oncogene activation by PI3K inhibition: epigenetic mechanism and prognostic significance in human glioblastoma.; Cancer Res, 70: 453-62 |
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GSE4271.1 GSE4271.2 |
| Costa, C et al. (2013) E2F1 loss induces spontaneous tumour development in Rb-deficient epidermis.; Oncogene, 32: 2937-51 |
|
GSE38048 |
| Costa, Pedro L F et al. (2019) Transcriptomic Response to 1,25-Dihydroxyvitamin D in Human Fibroblasts with or without a Functional Vitamin D Receptor (VDR): Novel Target Genes and Insights into VDR Basal Transcriptional Activity.; Cells, 8: [no pages] |
|
GSE127314 |
| Costales, Jaime A et al. (2009) Cytokine-dependent and-independent gene expression changes and cell cycle block revealed in Trypanosoma cruzi-infected host cells by comparative mRNA profiling.; BMC Genomics, 10: 252 |
|
GSE13791 |
| Costales-Carrera, Alba et al. (2020) Comparative Study of Organoids from Patient-Derived Normal and Tumor Colon and Rectal Tissue.; Cancers (Basel), 12: [no pages] |
|
GSE143782 |
| Costea, Daniela Elena et al. (2013) Identification of two distinct carcinoma-associated fibroblast subtypes with differential tumor-promoting abilities in oral squamous cell carcinoma.; Cancer Res, 73: 3888-901 |
|
GSE38517 |
| Costello, Christine M et al. (2008) Lung-selective gene responses to alveolar hypoxia: potential role for the bone morphogenetic antagonist gremlin in pulmonary hypertension.; Am J Physiol Lung Cell Mol Physiol, 295: L272-84 |
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GSE11341 |
| Costello, Patrick et al. (2010) Ternary complex factors SAP-1 and Elk-1, but not net, are functionally equivalent in thymocyte development.; J Immunol, 185: 1082-92 |
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GSE21546 |
| Costello, Patrick et al. (2015) MRTF-SRF signaling is required for seeding of HSC/Ps in bone marrow during development.; Blood, 125: 1244-55 |
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GSE63820 |
| Costigan, Michael et al. (2009) T-cell infiltration and signaling in the adult dorsal spinal cord is a major contributor to neuropathic pain-like hypersensitivity.; J Neurosci, 29: 14415-22 |
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GSE18803 |
| Costigan, Michael et al. (2010) Multiple chronic pain states are associated with a common amino acid-changing allele in KCNS1.; Brain, 133: 2519-27 |
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GSE30691 |
| Cote, Jessica L et al. (2021) Deletion of the Brain-Specific α and δ Isoforms of Adapter Protein SH2B1 Protects Mice From Obesity.; Diabetes, 70: 400-414 |
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GSE145202 |
| Cotero, Victoria et al. (2022) Stimulation of the hepatoportal nerve plexus with focused ultrasound restores glucose homoeostasis in diabetic mice, rats and swine.; Nat Biomed Eng, 6: 683-705 |
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GSE197097 |
| Cotney, Justin et al. (2015) The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment.; Nat Commun, 6: 6404 |
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GSE57369.2 |
| Cottet, Sandra et al. (2006) Biological characterization of gene response in Rpe65-/- mouse model of Leber's congenital amaurosis during progression of the disease.; FASEB J, 20: 2036-49 |
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GSE3249 |
| Couch, Amalie C M et al. (2023) Acute IL-6 exposure triggers canonical IL6Ra signaling in hiPSC microglia, but not neural progenitor cells.; Brain Behav Immun, 110: 43-59 |
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GSE278224 |
| Couch, Amalie C M et al. (2024) Transcriptional and cellular response of hiPSC-derived microglia-neural progenitor co-cultures exposed to IL-6.; Brain Behav Immun, 122: 27-43 |
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GSE279125 |
| Coudé, Marie-Magdelaine et al. (2015) BET inhibitor OTX015 targets BRD2 and BRD4 and decreases c-MYC in acute leukemia cells.; Oncotarget, 6: 17698-712 |
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GSE70263 |
| Cougnoux, Antony et al. (2018) Microglia activation in Niemann-Pick disease, type C1 is amendable to therapeutic intervention.; Hum Mol Genet, 27: 2076-2089 |
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GSE109083 |
| Coulibaly, Anna et al. (2019) AKIRIN1: A Potential New Reference Gene in Human Natural Killer Cells and Granulocytes in Sepsis.; Int J Mol Sci, 20: [no pages] |
|
GSE123730 |
| Coulouarn, Cédric et al. (2012) Combined hepatocellular-cholangiocarcinomas exhibit progenitor features and activation of Wnt and TGF? signaling pathways.; Carcinogenesis, 33: 1791-6 |
|
GSE35306 |
| Coulter, Michael E et al. (2018) The ESCRT-III Protein CHMP1A Mediates Secretion of Sonic Hedgehog on a Distinctive Subtype of Extracellular Vesicles.; Cell Rep, 24: 973-986.e8 |
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GSE115867.1 |
| Courtin, Aurélie et al. (2012) Glucocorticoid receptor activity discriminates between progesterone and medroxyprogesterone acetate effects in breast cells.; Breast Cancer Res Treat, 131: 49-63 |
|
GSE23500 |
| Coustan-Smith, Elaine et al. (2009) Early T-cell precursor leukaemia: a subtype of very high-risk acute lymphoblastic leukaemia.; Lancet Oncol, 10: 147-56 |
|
GSE8879 |
| Coustan-Smith, Elaine et al. (2011) New markers for minimal residual disease detection in acute lymphoblastic leukemia.; Blood, 117: 6267-76 |
|
GSE28497 |
| Couture, Camille et al. (2016) The tissue-engineered human cornea as a model to study expression of matrix metalloproteinases during corneal wound healing.; Biomaterials, 78: 86-101 |
|
GSE75336 |
| Couturier, Aude et al. (2021) Reproducing diabetic retinopathy features using newly developed human induced-pluripotent stem cell-derived retinal Müller glial cells.; Glia, [no vol.]: [no pages] |
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GSE166565 |
| Covacu, Ruxandra et al. (2014) Change of fate commitment in adult neural progenitor cells subjected to chronic inflammation.; J Neurosci, 34: 11571-82 |
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GSE46373 |
| Covey, Matthew V et al. (2012) REST regulates the pool size of the different neural lineages by restricting the generation of neurons and oligodendrocytes from neural stem/progenitor cells.; Development, 139: 2878-90 |
|
GSE38538 |
| Cowan, Maureen N et al. (2022) Microglial STAT1-sufficiency is required for resistance to toxoplasmic encephalitis.; PLoS Pathog, 18: e1010637 |
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GSE203655 GSE204751 |
| Cox, Aaron R et al. (2013) Cellular mechanisms underlying failed beta cell regeneration in offspring of protein-restricted pregnant mice.; Exp Biol Med (Maywood), 238: 1147-59 |
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GSE38215 |
| Cox, Laura E et al. (2010) Mutations in CHMP2B in lower motor neuron predominant amyotrophic lateral sclerosis (ALS).; PLoS One, 5: e9872 |
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GSE19332 |
| Cox, Laura M et al. (2014) Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences.; Cell, 158: 705-21 |
|
GSE58089 |
| Cox, Olivia H et al. (2024) Transcriptomic Plasticity of the Circadian Clock in Response to Photoperiod: A Study in Male Melatonin-Competent Mice.; J Biol Rhythms, [no vol.]: 7487304241265439 |
|
GSE266472 |
| Cox, Sharon N et al. (2010) Altered modulation of WNT-beta-catenin and PI3K/Akt pathways in IgA nephropathy.; Kidney Int, 78: 396-407 |
|
GSE14795 |
| Cox-Limpens, Kimberly E M et al. (2014) Fetal asphyctic preconditioning alters the transcriptional response to perinatal asphyxia.; BMC Neurosci, 15: 67 |
|
GSE42676 |
| Coykendall, Vy M N et al. (2024) RFX6 Maintains Gene Expression and Function of Adult Human Islet α-Cells.; Diabetes, 73: 448-460 |
|
GSE248853 |
| Coyoy-Salgado, Angélica et al. (2023) Gene expression and locomotor recovery in adult rats with spinal cord injury and plasma-synthesized polypyrrole/iodine application combined with a mixed rehabilitation scheme.; Front Neurol, 14: 1124245 |
|
GSE223820 |
| Cozzolino, Kira et al. (2023) Mediator kinase inhibition suppresses hyperactive interferon signaling in Down syndrome.; bioRxiv, [no vol.]: [no pages] |
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GSE220652 |
| Craciun, Florin L et al. (2016) RNA Sequencing Identifies Novel Translational Biomarkers of Kidney Fibrosis.; J Am Soc Nephrol, 27: 1702-13 |
|
GSE65267 |
| Cramer-Morales, Kimberly et al. (2013) Personalized synthetic lethality induced by targeting RAD52 in leukemias identified by gene mutation and expression profile.; Blood, 122: 1293-304 |
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GSE48558 GSE47927 |
| Crapser, Joshua D et al. [Unknown date]Microglial depletion prevents extracellular matrix changes and striatal volume reduction in a model of Huntington's disease.; Brain, 143: 266-288 |
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GSE136158 |
| Craveiro, Luis M et al. (2008) Neutralization of the membrane protein Nogo-A enhances growth and reactive sprouting in established organotypic hippocampal slice cultures.; Eur J Neurosci, 28: 1808-24 |
|
GSE12483 |
| Crawford, Peter A et al. (2009) Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation.; Proc Natl Acad Sci U S A, 106: 11276-81 |
|
GSE14929 |
| Crawford, Yongping et al. (2009) PDGF-C mediates the angiogenic and tumorigenic properties of fibroblasts associated with tumors refractory to anti-VEGF treatment.; Cancer Cell, 15: 21-34 |
|
GSE13549 |
| Creeth, H D J et al. (2018) Maternal care boosted by paternal imprinting in mammals.; PLoS Biol, 16: e2006599 |
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GSE115276 |
| Creighton, Chad J et al. (2008) Development of resistance to targeted therapies transforms the clinically associated molecular profile subtype of breast tumor xenografts.; Cancer Res, 68: 7493-501 |
|
GSE8141 |
| Creighton, Chad J et al. (2008) Insulin-like growth factor-I activates gene transcription programs strongly associated with poor breast cancer prognosis.; J Clin Oncol, 26: 4078-85 |
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GSE7561 |
| Creighton, Chad J et al. (2009) Residual breast cancers after conventional therapy display mesenchymal as well as tumor-initiating features.; Proc Natl Acad Sci U S A, 106: 13820-5 |
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GSE10281 GSE7515 GSE7513 |
| Creighton, Chad J et al. (2010) Molecular profiling uncovers a p53-associated role for microRNA-31 in inhibiting the proliferation of serous ovarian carcinomas and other cancers.; Cancer Res, 70: 1906-15 |
|
GSE16708 |
| Creighton, Chad J et al. (2012) A gene transcription signature of obesity in breast cancer.; Breast Cancer Res Treat, [no vol.]: [no pages] |
|
GSE24185 |
| Creus-Muncunill, Jordi et al. (2021) Huntington's disease brain-derived small RNAs recapitulate associated neuropathology in mice.; Acta Neuropathol, 141: 565-584 |
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GSE165667 GSE165658 |
| Creus-Muncunill, Jordi et al. (2024) TYROBP/DAP12 knockout in Huntington's disease Q175 mice cell-autonomously decreases microglial expression of disease-associated genes and non-cell-autonomously mitigates astrogliosis and motor deterioration.; J Neuroinflammation, 21: 66 |
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GSE195633 GSE193573 |
| Crews, David et al. (2012) Epigenetic transgenerational inheritance of altered stress responses.; Proc Natl Acad Sci U S A, 109: 9143-8 |
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GSE26737 |
| Cribbs, Adam P et al. (2021) Dissecting the Role of BET Bromodomain Proteins BRD2 and BRD4 in Human NK Cell Function.; Front Immunol, 12: 626255 |
|
GSE156423.1 |
| Crispi, Stefania et al. (2009) Global gene expression profiling of human pleural mesotheliomas: identification of matrix metalloproteinase 14 (MMP-14) as potential tumour target.; PLoS One, 4: e7016 |
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GSE12345 |