List of all 16,758 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Crispi, Stefania et al. (2013) Transcriptional profiling of endometriosis tissues identifies genes related to organogenesis defects.; J Cell Physiol, 228: 1927-34 |
|
GSE25628 |
| Crist, Angela M et al. [Unknown date]Angiopoietin-2 Inhibition Rescues Arteriovenous Malformation in a Smad4 Hereditary Hemorrhagic Telangiectasia Mouse Model.; Circulation, 139: 2049-2063 |
|
GSE116230 |
| Cristea, Sandra et al. (2020) The MEK5-ERK5 Kinase Axis Controls Lipid Metabolism in Small-Cell Lung Cancer.; Cancer Res, 80: 1293-1303 |
|
GSE121538.2 |
| Critchley-Thorne, Rebecca J et al. (2007) Down-regulation of the interferon signaling pathway in T lymphocytes from patients with metastatic melanoma.; PLoS Med, 4: e176 |
|
GSE6887 |
| Crittenden, Jill R et al. (2021) Striatal transcriptome changes linked to drug-induced repetitive behaviors.; Eur J Neurosci, 53: 2450-2468 |
|
GSE157913 |
| Croci, Davide et al. (2022) Multispectral fluorine-19 MRI enables longitudinal and noninvasive monitoring of tumor-associated macrophages.; Sci Transl Med, 14: eabo2952 |
|
GSE190109 |
| Croci, Ottavio et al. (2017) Transcriptional integration of mitogenic and mechanical signals by Myc and YAP.; Genes Dev, 31: 2017-2022 |
|
GSE107583 |
| Croker, Ben A et al. (2003) SOCS3 negatively regulates IL-6 signaling in vivo.; Nat Immunol, 4: 540-5 |
|
GSE369 |
| Croker, Ben et al. (2007) ATP-sensitive potassium channels mediate survival during infection in mammals and insects.; Nat Genet, 39: 1453-60 |
|
GSE7605 |
| Cromer, Anne et al. (2004) Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis.; Oncogene, 23: 2484-98 |
|
GSE2379 |
| Cronin, T et al. (2010) The disruption of the rod-derived cone viability gene leads to photoreceptor dysfunction and susceptibility to oxidative stress.; Cell Death Differ, 17: 1199-210 |
|
GSE13869 |
| Cronk, James C et al. (2015) Methyl-CpG Binding Protein 2 Regulates Microglia and Macrophage Gene Expression in Response to Inflammatory Stimuli.; Immunity, 42: 679-91 |
|
GSE66211 |
| Cronk, James C et al. (2018) Peripherally derived macrophages can engraft the brain independent of irradiation and maintain an identity distinct from microglia.; J Exp Med, 215: 1627-1647 |
|
GSE108569 GSE108575 GSE84819 |
| Cros, Cécile et al. (2022) Nicotinamide Mononucleotide Administration Triggers Macrophages Reprogramming and Alleviates Inflammation During Sepsis Induced by Experimental Peritonitis.; Front Mol Biosci, 9: 895028 |
|
GSE199156 |
| Crossman, Lucy C et al. (2005) In chronic myeloid leukemia white cells from cytogenetic responders and non-responders to imatinib have very similar gene expression signatures.; Haematologica, 90: 459-64 |
|
GSE2535 |
| Crothers, Kristina et al. (2016) Widespread activation of immunity and pro-inflammatory programs in peripheral blood leukocytes of HIV-infected patients with impaired lung gas exchange.; Physiol Rep, 4: [no pages] |
|
GSE76403 |
| Crotta, Stefania et al. (2013) Type I and type III interferons drive redundant amplification loops to induce a transcriptional signature in influenza-infected airway epithelia.; PLoS Pathog, 9: e1003773 |
|
GSE43710 |
| Crotti, Andrea et al. (2014) Mutant Huntingtin promotes autonomous microglia activation via myeloid lineage-determining factors.; Nat Neurosci, 17: 513-21 |
|
GSE54443 |
| Crotti, Andrea et al. (2019) BIN1 favors the spreading of Tau via extracellular vesicles.; Sci Rep, 9: 9477 |
|
GSE132877 |
| Crouchet, Emilie et al. (2021) A human liver cell-based system modeling a clinical prognostic liver signature for therapeutic discovery.; Nat Commun, 12: 5525 |
|
GSE169084 |
| Crouser, Elliott D et al. (2009) Gene expression profiling identifies MMP-12 and ADAMDEC1 as potential pathogenic mediators of pulmonary sarcoidosis.; Am J Respir Crit Care Med, 179: 929-38 |
|
GSE16538 |
| Croushore, Emma E et al. (2023) Activator Protein-1 (AP-1) Signaling Inhibits the Growth of Ewing Sarcoma Cells in Response to DNA Replication Stress.; Cancer Res Commun, 3: 1580-1593 |
|
GSE215881 |
| Crowell, Preston D et al. (2023) MYC is a regulator of androgen receptor inhibition-induced metabolic requirements in prostate cancer.; Cell Rep, 42: 113221 |
|
GSE202897 |
| Crowley, James J et al. (2015) Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance.; Nat Genet, 47: 353-60 |
|
GSE44555 |
| Crowley, Maura A et al. (2022) Complement factor B is critical for sub-RPE deposit accumulation in a model of Doyne honeycomb retinal dystrophy with features of age-related macular degeneration.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE210492 |
| Croze, Roxanne H et al. (2014) ROCK Inhibition Extends Passage of Pluripotent Stem Cell-Derived Retinal Pigmented Epithelium.; Stem Cells Transl Med, 3: 1066-78 |
|
GSE56618 |
| Cruciani-Guglielmacci, Céline et al. (2017) Molecular phenotyping of multiple mouse strains under metabolic challenge uncovers a role forElovl2in glucose-induced insulin secretion.; Mol Metab, 6: 340-351 |
|
GSE78183 |
| Crump, Nicholas T et al. (2021) Chromatin accessibility governs the differential response of cancer and T cells to arginine starvation.; Cell Rep, 35: 109101 |
|
GSE137033 |
| Cruz Tleugabulova, Mayra et al. (2024) Induction of a distinct macrophage population and protection from lung injury and fibrosis by Notch2 blockade.; Nat Commun, 15: 9575 |
|
GSE277297 |
| Cruz-Orengo, Lillian et al. (2014) Enhanced sphingosine-1-phosphate receptor 2 expression underlies female CNS autoimmunity susceptibility.; J Clin Invest, 124: 2571-84 |
|
GSE55718 |
| Cuadrado, Ana et al. (2015) The contribution of cohesin-SA1 to gene expression and chromatin architecture in two murine tissues.; Nucleic Acids Res, 43: 3056-67 |
|
GSE59119.2 GSE59119.1 |
| Cuadrado-Tejedor, M et al. (2015) Concomitant histone deacetylase and phosphodiesterase 5 inhibition synergistically prevents the disruption in synaptic plasticity and it reverses cognitive impairment in a mouse model of Alzheimer's disease.; Clin Epigenetics, 7: 108 |
|
GSE62240 |
| Cuadrado-Tejedor, Mar et al. (2019) Taking Advantage of the Selectivity of Histone Deacetylases and Phosphodiesterase Inhibitors to Design Better Therapeutic Strategies to Treat Alzheimer's Disease.; Front Aging Neurosci, 11: 149 |
|
GSE128422 |
| Cubelos, Beatriz et al. (2010) Cux1 and Cux2 regulate dendritic branching, spine morphology, and synapses of the upper layer neurons of the cortex.; Neuron, 66: 523-35 |
|
GSE14971 |
| Cuda, Carla M et al. (2012) Pre-B cell leukemia homeobox 1 is associated with lupus susceptibility in mice and humans.; J Immunol, 188: 604-14 |
|
GSE22799 GSE22313 |
| Cuesta, Santiago et al. (2022) Gut colonization by Proteobacteria alters host metabolism and modulates cocaine neurobehavioral responses.; Cell Host Microbe, 30: 1615-1629.e5 |
|
GSE212421 |
| Cuesta-Borràs, Estefania et al. (2023) DPPA3-HIF1α axis controls colorectal cancer chemoresistance by imposing a slow cell-cycle phenotype.; Cell Rep, 42: 112927 |
|
GSE207862 |
| Cuevas, Rolando A et al. (2023) Ecto-5'-nucleotidase (Nt5e/CD73)-mediated adenosine signaling attenuates TGFβ-2 induced elastin and cellular contraction.; Am J Physiol Cell Physiol, 324: C327-C338 |
|
GSE216727 |
| Cuevas, Víctor D et al. (2022) The Gene Signature of Activated M-CSF-Primed Human Monocyte-Derived Macrophages Is IL-10-Dependent.; J Innate Immun, 14: 243-256 |
|
GSE180897 |
| Cuevas-Diaz Duran, Raquel et al. (2022) Major Differences in Transcriptional Alterations in Dorsal Root Ganglia between Spinal Cord Injury and Peripheral Neuropathic Pain Models.; J Neurotrauma, [no vol.]: [no pages] |
|
GSE202111 |
| Cui, B Celia et al. (2024) Suppression of HIV-TAT and cocaine-induced neurotoxicity and inflammation by cell penetrable itaconate esters.; J Neurovirol, 30: 337-352 |
|
GSE269380 |
| Cui, Chang-Yi et al. (2010) Dkk4 and Eda regulate distinctive developmental mechanisms for subtypes of mouse hair.; PLoS One, 5: e10009 |
|
GSE19312 GSE19309 |
| Cui, Chang-Yi et al. (2012) Forkhead transcription factor FoxA1 regulates sweat secretion through Bestrophin 2 anion channel and Na-K-Cl cotransporter 1.; Proc Natl Acad Sci U S A, 109: 1199-203 |
|
GSE32347 |
| Cui, Chang-Yi et al. (2016) Identification of potassium and chloride channels in eccrine sweat glands.; J Dermatol Sci, 81: 129-31 |
|
GSE73715 |
| Cui, Fengzhen et al. (2021) Maternal Benzophenone Exposure Impairs Hippocampus Development and Cognitive Function in Mouse Offspring.; Adv Sci (Weinh), 8: e2102686 |
|
GSE166506 |
| Cui, Haissi et al. (2023) Arg-tRNA synthetase links inflammatory metabolism to RNA splicing and nuclear trafficking via SRRM2.; Nat Cell Biol, 25: 592-603 |
|
GSE165513 |
| Cui, Jia et al. (2024) m3C32 tRNA modification controls serine codon-biased mRNA translation, cell cycle, and DNA-damage response.; Nat Commun, 15: 5775 |
|
GSE223418 |
| Cui, Jianchen et al. (2022) Repeated ketamine anesthesia during neurodevelopment upregulates hippocampal activity and enhances drug reward in male mice.; Commun Biol, 5: 709 |
|
GSE175894 |
| Cui, Juan et al. (2011) An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer.; Nucleic Acids Res, 39: 1197-207 |
|
GSE27342 |
| Cui, Kairong et al. (2023) Restraint of IFN-γ expression through a distal silencer CNS-28 for tissue homeostasis.; Immunity, 56: 944-958.e6 |
|
GSE204946 |
| Cui, Libin et al. (2006) Transcriptional repression of PGC-1alpha by mutant huntingtin leads to mitochondrial dysfunction and neurodegeneration.; Cell, 127: 59-69 |
|
GSE5786 |
| Cui, Lu et al. (2013) WNT signaling determines tumorigenicity and function of ESC-derived retinal progenitors.; J Clin Invest, 123: 1647-61 |
|
GSE34002 |
| Cui, Siying et al. (2024) Zinc-Finger Protein ZFP488 Regulates the Timing of Oligodendrocyte Myelination and Remyelination.; J Neurosci, 44: [no pages] |
|
GSE252853 |
| Cui, Xiao-Long et al. (2020) A human tissue map of 5-hydroxymethylcytosines exhibits tissue specificity through gene and enhancer modulation.; Nat Commun, 11: 6161 |
|
GSE144530 |
| Cui, Xiaojing et al. (2023) Latexin regulates sex dimorphism in hematopoiesis via gender-specific differential expression of microRNA 98-3p and thrombospondin 1.; Cell Rep, 42: 112274 |
|
GSE213283 |
| Cui, Xiaoli et al. (2022) Identification and characterization of long non-coding RNA Carip in modulating spatial learning and memory.; Cell Rep, 38: 110398 |
|
GSE164123 |
| Cui, Xiaolin et al. (2005) cGMP-independent nitric oxide signaling and regulation of the cell cycle.; BMC Genomics, 6: 151 |
|
GSE2649 |
| Cui, Xiekui et al. (2025) Comparative characterization of human accelerated regions in neurons.; Nature, [no vol.]: [no pages] |
|
GSE221828.1 |
| Cui, Yuxia et al. (2011) Genomic-derived markers for early detection of calcineurin inhibitor immunosuppressant-mediated nephrotoxicity.; Toxicol Sci, 124: 23-34 |
|
GSE19366 |
| Cui, Zhibin et al. (2017) KANK1 inhibits cell growth by inducing apoptosis through regulating CXXC5 in human malignant peripheral nerve sheath tumors.; Sci Rep, 7: 40325 |
|
GSE85271 |
| Cukier, Holly N et al. (2022) Genomic, transcriptomic, and metabolomic profiles of hiPSC-derived dopamine neurons from clinically discordant brothers with identical PRKN deletions.; NPJ Parkinsons Dis, 8: 84 |
|
GSE184694 |
| Cullen, Paul F et al. (2024) Transcriptional profiling of retinal astrocytes identifies a specific marker and points to functional specialization.; Glia, 72: 1604-1628 |
|
GSE265994 |
| Culver, Brady P et al. (2016) Huntington's Disease Protein Huntingtin Associates with its own mRNA.; J Huntingtons Dis, 5: 39-51 |
|
GSE92905 |
| Cummings, Damian M et al. (2015) First effects of rising amyloid-? in transgenic mouse brain: synaptic transmission and gene expression.; Brain, 138: 1992-2004 |
|
GSE64398 |
| Cunha, Stéphanie et al. (2014) The RON receptor tyrosine kinase promotes metastasis by triggering MBD4-dependent DNA methylation reprogramming.; Cell Rep, 6: 141-54 |
|
GSE52567 |
| Cunningham, John T et al. (2007) mTOR controls mitochondrial oxidative function through a YY1-PGC-1alpha transcriptional complex.; Nature, 450: 736-40 |
|
GSE5332.2 GSE5332.1 |
| Cunningham, Thomas J et al. (2016) Early molecular events during retinoic acid induced differentiation of neuromesodermal progenitors.; Biol Open, 5: 1821-1833 |
|
GSE83251 |
| Currais, Antonio et al. (2015) A comprehensive multiomics approach toward understanding the relationship between aging and dementia.; Aging (Albany NY), 7: 937-55 |
|
GSE69244 |
| Currais, Antonio et al. (2019) Elevating acetyl-CoA levels reduces aspects of brain aging.; Elife, 8: [no pages] |
|
GSE101112.1 GSE101112.2 |
| Currais, Antonio et al. (2021) A chemical biology approach to identifying molecular pathways associated with aging.; Geroscience, 43: 353-365 |
|
GSE108776.1 |
| Currais, Antonio et al. (2025) Transcriptomic signatures of oxytosis/ferroptosis are enriched in Alzheimer's disease.; BMC Biol, 23: 132 |
|
GSE278716 |
| Curran, Colleen S et al. (2023) Nicotinamide Antagonizes Lipopolysaccharide-Induced Hypoxic Cell Signals in Human Macrophages.; J Immunol, 211: 261-273 |
|
GSE188206 |
| Currey, Nicola et al. (2019) Mouse Model of Mutated in Colorectal Cancer Gene Deletion Reveals Novel Pathways in Inflammation and Cancer.; Cell Mol Gastroenterol Hepatol, 7: 819-839 |
|
GSE84391 |
| Currie, Richard A et al. (2005) Gene ontology mapping as an unbiased method for identifying molecular pathways and processes affected by toxicant exposure: application to acute effects caused by the rodent non-genotoxic carcinogen diethylhexylphthalate.; Toxicol Sci, 86: 453-69 |
|
GSE55733 |
| Currie, Simon L et al. (2017) ETV4 and AP1 Transcription Factors Form Multivalent Interactions with three Sites on the MED25 Activator-Interacting Domain.; J Mol Biol, 429: 2975-2995 |
|
GSE133447 |
| Currier, Jenna M et al. (2016) Developing a Gene Biomarker at the Tipping Point of Adaptive and Adverse Responses in Human Bronchial Epithelial Cells.; PLoS One, 11: e0155875 |
|
GSE80733 |
| Curtiss, Brittany M et al. (2022) PU.1 and MYC transcriptional network defines synergistic drug responses to KIT and LSD1 inhibition in acute myeloid leukemia.; Leukemia, 36: 1781-1793 |
|
GSE182150.1 |
| Cusanovich, Darren A et al. (2012) The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes.; Hum Mol Genet, 21: 2111-23 |
|
GSE30697 |
| Cusanovich, Darren A et al. (2014) The functional consequences of variation in transcription factor binding.; PLoS Genet, 10: e1004226 |
|
GSE50588 |
| Cutcliffe, Colleen et al. (2005) Clear cell sarcoma of the kidney: up-regulation of neural markers with activation of the sonic hedgehog and Akt pathways.; Clin Cancer Res, 11: 7986-94 |
|
GSE2712 |
| Cutler, Corey et al. (2013) Prostaglandin-modulated umbilical cord blood hematopoietic stem cell transplantation.; Blood, 122: 3074-81 |
|
GSE36547 |
| Cuttano, Roberto et al. (2022) miRNome profiling of lung cancer metastases revealed a key role for miRNA-PD-L1 axis in the modulation of chemotherapy response.; J Hematol Oncol, 15: 178 |
|
GSE193719 |
| Cvetkovic, Caroline et al. (2022) Assessing Gq-GPCR-induced human astrocyte reactivity using bioengineered neural organoids.; J Cell Biol, 221: [no pages] |
|
GSE187436 |
| Cvetkovic-Lopes, Vesna et al. (2010) Elevated Tribbles homolog 2-specific antibody levels in narcolepsy patients.; J Clin Invest, 120: 713-9 |
|
GSE17617 |
| Cvijanovich, Natalie et al. (2008) Validating the genomic signature of pediatric septic shock.; Physiol Genomics, 34: 127-34 |
|
GSE9692 |
| Cvitic, Silvija et al. (2013) The human placental sexome differs between trophoblast epithelium and villous vessel endothelium.; PLoS One, 8: e79233 |
|
GSE44368 |
| Cyr, A R et al. (2015) TFAP2C governs the luminal epithelial phenotype in mammary development and carcinogenesis.; Oncogene, 34: 436-44 |
|
GSE44203 |
| Czaniecki, Christopher et al. (2019) Axonal pathology in hPSC-based models of Parkinson's disease results from loss of Nrf2 transcriptional activity at the Map1b gene locus.; Proc Natl Acad Sci U S A, 116: 14280-14289 |
|
GSE131597 |
| Czermi?ski, Jan Tomasz et al. (2020) Silencing Trisomy 21 with XIST in Neural Stem Cells Promotes Neuronal Differentiation.; Dev Cell, 52: 294-308.e3 |
|
GSE125837 |
| Czerminski, Jan T et al. (2022) Large-scale organoid study suggests effects of trisomy 21 on early fetal neurodevelopment are more subtle than variability between isogenic lines and experiments.; Front Neurosci, 16: 972201 |
|
GSE222365.1 GSE222365.2 |
| Czibere, Ludwig et al. (2011) Profiling trait anxiety: transcriptome analysis reveals cathepsin B (Ctsb) as a novel candidate gene for emotionality in mice.; PLoS One, 6: e23604 |
|
GSE29014 |
| D'Agnillo, Felice et al. (2021) Lung epithelial and endothelial damage, loss of tissue repair, inhibition of fibrinolysis, and cellular senescence in fatal COVID-19.; Sci Transl Med, 13: eabj7790 |
|
GSE180226 |