List of all 16,762 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| D'Agnillo, Felice et al. (2021) Lung epithelial and endothelial damage, loss of tissue repair, inhibition of fibrinolysis, and cellular senescence in fatal COVID-19.; Sci Transl Med, 13: eabj7790 |
|
GSE180226 |
| D'Aiuto, Leonardo et al. (2012) Human induced pluripotent stem cell-derived models to investigate human cytomegalovirus infection in neural cells.; PLoS One, 7: e49700 |
|
GSE35295 |
| D'Aiuto, Leonardo et al. (2015) Persistent infection by HSV-1 is associated with changes in functional architecture of iPSC-derived neurons and brain activation patterns underlying working memory performance.; Schizophr Bull, 41: 123-32 |
|
GSE46041 GSE46042 |
| D'Aiuto, Leonardo et al. [Unknown date]R430: A potent inhibitor of DNA and RNA viruses.; Sci Rep, 8: 16662 |
|
GSE111656 |
| D'Alessandro, Josephine S et al. (2015) Equivalent Gene Expression Profiles between Glatopa™ and Copaxone®.; PLoS One, 10: e0140299 |
|
GSE73465 |
| D'Alessio, Ana C et al. (2015) A Systematic Approach to Identify Candidate Transcription Factors that Control Cell Identity.; Stem Cell Reports, 5: 763-775 |
|
GSE64264.1 |
| D'Alfonso, Timothy M et al. (2013) BreastPRS is a gene expression assay that stratifies intermediate-risk Oncotype DX patients into high- or low-risk for disease recurrence.; Breast Cancer Res Treat, 139: 705-15 |
|
GSE47109 |
| D'Alise, Anna Morena et al. (2008) The defect in T-cell regulation in NOD mice is an effect on the T-cell effectors.; Proc Natl Acad Sci U S A, 105: 19857-62 |
|
GSE6813 |
| D'Antonio, Maurizio et al. (2013) Resetting translational homeostasis restores myelination in Charcot-Marie-Tooth disease type 1B mice.; J Exp Med, 210: 821-38 |
|
GSE40610 |
| D'Auria, Kevin M et al. (2012) Systems analysis of the transcriptional response of human ileocecal epithelial cells to Clostridium difficile toxins and effects on cell cycle control.; BMC Syst Biol, 6: 2 |
|
GSE29008 |
| D'Auria, Kevin M et al. (2013) In vivo physiological and transcriptional profiling reveals host responses to Clostridium difficile toxin A and toxin B.; Infect Immun, 81: 3814-24 |
|
GSE44091 |
| D'Aveni, Maud et al. (2015) G-CSF mobilizes CD34+ regulatory monocytes that inhibit graft-versus-host disease.; Sci Transl Med, 7: 281ra42 |
|
GSE65670 |
| D'Cruz, Louise M et al. (2010) An essential role for the transcription factor HEB in thymocyte survival, Tcra rearrangement and the development of natural killer T cells.; Nat Immunol, 11: 240-9 |
|
GSE19923 |
| D'Errico, Mariarosaria et al. (2009) Genome-wide expression profile of sporadic gastric cancers with microsatellite instability.; Eur J Cancer, 45: 461-9 |
|
GSE13911 |
| d'Errico, Paolo et al. (2022) Microglia contribute to the propagation of Aβ into unaffected brain tissue.; Nat Neurosci, 25: 20-25 |
|
GSE162920 |
| D'Onofrio, Mara et al. (2011) Early inflammation and immune response mRNAs in the brain of AD11 anti-NGF mice.; Neurobiol Aging, 32: 1007-22 |
|
GSE63617 |
| D'Onofrio, Mara et al. (2011) NGF and proNGF regulate functionally distinct mRNAs in PC12 cells: an early gene expression profiling.; PLoS One, 6: e20839 |
|
GSE26528 |
| D'Souza, Mary et al. (2008) Novel approach to select genes from RMA normalized microarray data using functional hearing tests in aging mice.; J Neurosci Methods, 171: 279-87 |
|
GSE49543 |
| D'Souza, Shane P et al. (2024) Developmental control of rod number via a light-dependent retrograde pathway from intrinsically photosensitive retinal ganglion cells.; Dev Cell, 59: 2897-2911.e6 |
|
GSE269102 |
| D?bski, Konrad J et al. [Unknown date]Etiology matters - Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy.; Sci Rep, 6: 25668 |
|
GSE75120 GSE75402 |
| Da Mesquita, Sandro et al. (2018) Functional aspects of meningeal lymphatics in ageing and Alzheimer's disease.; Nature, 560: 185-191 |
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GSE113351 GSE104181 GSE104182 |
| Da Mesquita, Sandro et al. (2021) Meningeal lymphatics affect microglia responses and anti-Aβ immunotherapy.; Nature, 593: 255-260 |
|
GSE160216 GSE141849 |
| Da Sacco, Stefano et al. (2013) A novel source of cultured podocytes.; PLoS One, 8: e81812 |
|
GSE49439 |
| da Silva Costa, Sueli Matilde et al. (2024) The molecular mechanism responsible for HbSC retinopathy may depend on the action of the angiogenesis-related genesROBO1andSLC38A5.; Exp Biol Med (Maywood), 249: 10070 |
|
GSE240446 |
| Da Silva, Leonard et al. (2010) HER3 and downstream pathways are involved in colonization of brain metastases from breast cancer.; Breast Cancer Res, 12: R46 |
|
GSE14682 GSE14683 |
| da Silva, Patrícia Benites Gonçalves et al. (2017) High OCT4A levels drive tumorigenicity and metastatic potential of medulloblastoma cells.; Oncotarget, 8: 19192-19204 |
|
GSE77947 |
| da Silva, Rafaela et al. (2004) Ischemic but not pharmacological preconditioning elicits a gene expression profile similar to unprotected myocardium.; Physiol Genomics, 20: 117-30 |
|
GSE1616 |
| Da Vitoria Lobo, Marlene et al. (2024) Early-life cisplatin exposure induces neuroinflammation and chemotherapy-induced neuropathic pain.; Dis Model Mech, 17: [no pages] |
|
GSE281897 |
| Dabir, Snehal et al. (2014) PIAS3 activates the intrinsic apoptotic pathway in non-small cell lung cancer cells independent of p53 status.; Int J Cancer, 134: 1045-54 |
|
GSE42979 |
| Daboussi, Lydia et al. (2023) Mitf is a Schwann cell sensor of axonal integrity that drives nerve repair.; Cell Rep, 42: 113282 |
|
GSE218702 |
| Dabydeen, Sarah A et al. (2015) Comparison of tamoxifen and letrozole response in mammary preneoplasia of ER and aromatase overexpressing mice defines an immune-associated gene signature linked to tamoxifen resistance.; Carcinogenesis, 36: 122-32 |
|
GSE63857 |
| Dachet, Fabien et al. (2019) Predicting disease specific spinal motor neurons and glia in sporadic ALS.; Neurobiol Dis, 130: 104523 |
|
GSE76220 |
| Dacomo, Letizia et al. (2024) Transcriptomic and metabolomic changes might predict frailty in SAMP8 mice.; Aging Cell, 23: e14263 |
|
GSE270589 |
| Dadgar, Sherry et al. (2014) Asynchronous remodeling is a driver of failed regeneration in Duchenne muscular dystrophy.; J Cell Biol, 207: 139-58 |
|
GSE109178 |
| Dadi, Saïda et al. (2016) Cancer Immunosurveillance by Tissue-Resident Innate Lymphoid Cells and Innate-like T Cells.; Cell, 164: 365-77 |
|
GSE76362 |
| Dadras, Soheil S et al. (2008) Prox-1 promotes invasion of kaposiform hemangioendotheliomas.; J Invest Dermatol, 128: 2798-806 |
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GSE8171 |
| Dadrich, Monika et al. (2016) Combined inhibition of TGF? and PDGF signaling attenuates radiation-induced pulmonary fibrosis.; Oncoimmunology, 5: e1123366 |
|
GSE65011 |
| Daemen, Anneleen et al. (2013) Modeling precision treatment of breast cancer.; Genome Biol, 14: R110 |
|
GSE48213 |
| Dafinca, Ruxandra et al. (2020) Impairment of Mitochondrial Calcium Buffering Links Mutations in C9ORF72 and TARDBP in iPS-Derived Motor Neurons from Patients with ALS/FTD.; Stem Cell Reports, 14: 892-908 |
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GSE139144 GSE147544 |
| Daggubati, Vikas et al. (2023) Hedgehog target genes regulate lipid metabolism to drive basal cell carcinoma and medulloblastoma.; Res Sq, [no vol.]: [no pages] |
|
GSE233744.1 |
| Dahia, Patricia L M et al. (2005) A HIF1alpha regulatory loop links hypoxia and mitochondrial signals in pheochromocytomas.; PLoS Genet, 1: 72-80 |
|
GSE2841 |
| Dahiya, Neetu et al. (2008) MicroRNA expression and identification of putative miRNA targets in ovarian cancer.; PLoS One, 3: e2436 |
|
GSE12615 |
| Dahlman, I et al. (2010) Adipose tissue pathways involved in weight loss of cancer cachexia.; Br J Cancer, 102: 1541-8 |
|
GSE20571 |
| Dai, Li et al. (2021) Core transcriptional networks in Williams syndrome: IGF1-PI3K-AKT-mTOR, MAPK and actin signaling at the synapse echo autism.; Hum Mol Genet, 30: 411-429 |
|
GSE285666 |
| Dai, Lin et al. (2023) Genome-wide methylation analysis of circulating tumor DNA: A new biomarker for recurrent glioblastom.; Heliyon, 9: e14339 |
|
GSE205512 |
| Dai, Lu et al. (2015) Genomic analysis of xCT-mediated regulatory network: Identification of novel targets against AIDS-associated lymphoma.; Oncotarget, 6: 12710-22 |
|
GSE65418 |
| Dai, Shang-Kun et al. (2021) Histone crotonylation regulates neural stem cell fate decisions by activating bivalent promoters.; EMBO Rep, 22: e52023 |
|
GSE124540 |
| Dai, Shang-Kun et al. (2022) Dynamic profiling and functional interpretation of histone lysine crotonylation and lactylation during neural development.; Development, 149: [no pages] |
|
GSE171088 |
| Dai, Weiping et al. (2022) A functional role of meningeal lymphatics in sex difference of stress susceptibility in mice.; Nat Commun, 13: 4825 |
|
GSE201368 |
| Dai, Weiping et al. (2022) Sex-Specific Transcriptomic Signatures in Brain Regions Critical for Neuropathic Pain-Induced Depression.; Front Mol Neurosci, 15: 886916 |
|
GSE197233 |
| Dai, You-Wu et al. (2022) Meteorin links the bone marrow hypoxic state to hematopoietic stem/progenitor cell mobilization.; Cell Rep, 40: 111361 |
|
GSE198825 |
| Dai, Zifeng et al. (2022) Role of pericytes in the development of cerebral cavernous malformations.; iScience, 25: 105642 |
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GSE213244 |
| Daigeler, Adrien et al. (2008) Heterogeneous in vitro effects of doxorubicin on gene expression in primary human liposarcoma cultures.; BMC Cancer, 8: 313 |
|
GSE12972 |
| Daigle, Scott R et al. (2011) Selective killing of mixed lineage leukemia cells by a potent small-molecule DOT1L inhibitor.; Cancer Cell, 20: 53-65 |
|
GSE29828 |
| Dail, Monique et al. (2014) Loss of oncogenic Notch1 with resistance to a PI3K inhibitor in T-cell leukaemia.; Nature, 513: 512-6 |
|
GSE48260 |
| Daino, Kazuhiro et al. (2013) Loss of the BRCA1-interacting helicase BRIP1 results in abnormal mammary acinar morphogenesis.; PLoS One, 8: e74013 |
|
GSE33218 |
| Dairkee, Shanaz H et al. (2008) Bisphenol A induces a profile of tumor aggressiveness in high-risk cells from breast cancer patients.; Cancer Res, 68: 2076-80 |
|
GSE10270 |
| Daiwile, Atul P et al. (2024) Incubation of methamphetamine craving in punishment-resistant individuals is associated with activation of specific gene networks in the rat dorsal striatum.; Mol Psychiatry, 29: 1990-2000 |
|
GSE220896 |
| Dakhova, Olga et al. (2009) Global gene expression analysis of reactive stroma in prostate cancer.; Clin Cancer Res, 15: 3979-89 |
|
GSE11682 |
| Dalal, Jasbir et al. (2013) Translational profiling of hypocretin neurons identifies candidate molecules for sleep regulation.; Genes Dev, 27: 565-78 |
|
GSE38668 |
| Dalal, Jasbir S et al. (2017) Quantitative Nucleotide Level Analysis of Regulation of Translation in Response to Depolarization of Cultured Neural Cells.; Front Mol Neurosci, 10: 9 |
|
GSE77076 |
| Dalal, Jasbir Singh et al. (2021) Loss of Tsc1 in cerebellar Purkinje cells induces transcriptional and translation changes in FMRP target transcripts.; Elife, 10: [no pages] |
|
GSE169719.2 GSE169719.1 |
| Dalgliesh, Caroline et al. (2025) An ultra-conserved poison exon in the Tra2b gene encoding a splicing activator is essential for male fertility and meiotic cell division.; EMBO J, 44: 877-902 |
|
GSE235084 |
| Dali, Ouzna et al. (2024) Prenatal nicotine exposure leads to epigenetic alterations in peripheral nervous system signaling genes in the testis of the rat.; Epigenetics Chromatin, 17: 14 |
|
GSE253595 |
| Daly, James L et al. (2023) Multi-omic approach characterises the neuroprotective role of retromer in regulating lysosomal health.; Nat Commun, 14: 3086 |
|
GSE223292 |
| Damasceno, Samara et al. (2020) Top Common Differentially Expressed Genes in the Epileptogenic Nucleus of Two Strains of Rodents Susceptible to Audiogenic Seizures: WAR and GASH/Sal.; Front Neurol, 11: 33 |
|
GSE74150 |
| Damdinsuren, Bazarragchaa et al. (2010) Single round of antigen receptor signaling programs naive B cells to receive T cell help.; Immunity, 32: 355-66 |
|
GSE20477 |
| Damgaard, Mads V et al. (2022) Intravenous nicotinamide riboside elevates mouse skeletal muscle NAD+without impacting respiratory capacity or insulin sensitivity.; iScience, 25: 103863 |
|
GSE194193 |
| Damodaran, Arun Prasath et al. (2025) Proteomic study identifies Aurora-A-mediated regulation of alternative splicing through multiple splicing factors.; J Biol Chem, 301: 108000 |
|
GSE160733 GSE281881 |
| Damrath, Ewa et al. (2012) ATXN2-CAG42 sequesters PABPC1 into insolubility and induces FBXW8 in cerebellum of old ataxic knock-in mice.; PLoS Genet, 8: e1002920 |
|
GSE39640 |
| Dan, Qi-Qin et al. (2023) Urine-derived mesenchymal stem cells-derived exosomes enhances survival and proliferation of aging retinal ganglion cells.; BMC Mol Cell Biol, 24: 8 |
|
GSE224109 |
| Dan, Xiuli et al. (2020) DNA damage invokes mitophagy through a pathway involving Spata18.; Nucleic Acids Res, 48: 6611-6623 |
|
GSE150273 |
| Danek, Petr et al. [Unknown date]?-catenin-TCF/LEF signaling promotes steady-state and emergency granulopoiesis via G-CSF receptor upregulation.; Blood, [no vol.]: [no pages] |
|
GSE139668 |
| Danesi, Claudia et al. (2018) Increased Calcium Influx through L-type Calcium Channels in Human and Mouse Neural Progenitors Lacking Fragile X Mental Retardation Protein.; Stem Cell Reports, 11: 1449-1461 |
|
GSE103965 |
| Dang, Jason et al. [Unknown date]Zika Virus Depletes Neural Progenitors in Human Cerebral Organoids through Activation of the Innate Immune Receptor TLR3.; Cell Stem Cell, 19: 258-265 |
|
GSE80264 |
| Dang, Jason W et al. [Unknown date]Genome-wide Integrative Analysis of Zika-Virus-Infected Neuronal Stem Cells Reveals Roles for MicroRNAs in Cell Cycle and Stemness.; Cell Rep, 27: 3618-3628.e5 |
|
GSE113640 |
| Dang, Rui et al. (2025) Neuroligin-3 R451C induces gain-of-function gene expression in astroglia in an astroglia-enriched brain organoid model.; Cell Regen, 14: 1 |
|
GSE283484 |
| Dangond, Fernando et al. (2004) Molecular signature of late-stage human ALS revealed by expression profiling of postmortem spinal cord gray matter.; Physiol Genomics, 16: 229-39 |
|
GSE833 |
| Daniel, Colin J et al. (2022) T-cell Dysfunction upon Expression of MYC with Altered Phosphorylation at Threonine 58 and Serine 62.; Mol Cancer Res, 20: 1151-1165 |
|
GSE193995 |
| Danielli, Sara et al. (2023) The ion channel CALHM6 controls bacterial infection-induced cellular cross-talk at the immunological synapse.; EMBO J, 42: e111450 |
|
GSE223008 |
| Daniels, Brian P et al. (2017) Regional astrocyte IFN signaling restricts pathogenesis during neurotropic viral infection.; J Clin Invest, 127: 843-856 |
|
GSE89476 |
| Daniels, Brian P et al. [Unknown date]The Nucleotide Sensor ZBP1 and Kinase RIPK3 Induce the Enzyme IRG1 to Promote an Antiviral Metabolic State in Neurons.; Immunity, 50: 64-76.e4 |
|
GSE122121 |
| Danielsson, Karin et al. (2014) Genes involved in epithelial differentiation and development are differentially expressed in oral and genital lichen planus epithelium compared to normal epithelium.; Acta Derm Venereol, 94: 526-30 |
|
GSE52130 |
| Dannhausen, Katharina et al. [Unknown date]Immunomodulation with minocycline rescues retinal degeneration in juvenile neuronal ceroid lipofuscinosis mice highly susceptible to light damage.; Dis Model Mech, 11: [no pages] |
|
GSE118664 |
| Danti, Laura et al. (2023) CRISPR/Cas9-mediated activation of NR5A1 steers female human embryonic stem cell-derived bipotential gonadal-like cells towards a steroidogenic cell fate.; J Ovarian Res, 16: 194 |
|
GSE236653 |
| Danziger, Samuel A et al. (2017) An indicator cell assay for blood-based diagnostics.; PLoS One, 12: e0178608 |
|
GSE95810 GSE95842 GSE95659 |
| Dao, David et al. (2021) High-Fat Diet Alters the Retinal Transcriptome in the Absence of Gut Microbiota.; Cells, 10: [no pages] |
|
GSE240018 |
| Dao, Lan et al. (2024) Modeling blood-brain barrier formation and cerebral cavernous malformations in human PSC-derived organoids.; Cell Stem Cell, 31: 818-833.e11 |
|
GSE263425 |
| Darbo, Elodie et al. (2023) Distinct Cellular Origins and Differentiation Process Account for Distinct Oncogenic and Clinical Behaviors of Leiomyosarcomas.; Cancers (Basel), 15: [no pages] |
|
GSE159848 |