List of all 16,773 published papers with data in Gemma:

To search for a paper or experiment and see more details, visit the annotated paper search page.

de Conti, Aline et al. (2020) Butyrate-containing structured lipids inhibit RAC1 and epithelial-to-mesenchymal transition markers: a chemopreventive mechanism against hepatocarcinogenesis.; J Nutr Biochem, 86: 108496		GSE109685
De Coster, Sam et al. (2013) Gender-specific transcriptomic response to environmental exposure in Flemish adults.; Environ Mol Mutagen, 54: 574-88		GSE44422
de Cremoux, Patricia et al. (2011) Importance of pre-analytical steps for transcriptome and RT-qPCR analyses in the context of the phase II randomised multicentre trial REMAGUS02 of neoadjuvant chemotherapy in breast cancer patients.; BMC Cancer, 11: 215		GSE26639
De Decker, Matthias et al. (2020) HES1 and HES4 have non-redundant roles downstream of Notch during early human T cell development.; Haematologica, [no vol.]: [no pages]		GSE130614
De Feo, Donatella et al. (2017) Neural precursor cell-secreted TGF-?2 redirects inflammatory monocyte-derived cells in CNS autoimmunity.; J Clin Invest, 127: 3937-3953		GSE92395
De Franco, Elisa et al. (2023) Primate-specific ZNF808 is essential for pancreatic development in humans.; Nat Genet, 55: 2075-2081		GSE205163
De Franco, Marcelo et al. (2014) Pristane-induced arthritis loci interact with the Slc11a1 gene to determine susceptibility in mice selected for high inflammation.; PLoS One, 9: e88302		GSE51516
De Gregorio, Roberto et al. (2018) miR-34b/c Regulates Wnt1 and Enhances Mesencephalic Dopaminergic Neuron Differentiation.; Stem Cell Reports, 10: 1237-1250		GSE110196
De Gregorio, Roberto et al. (2022) Sex-biased effects on hippocampal circuit development by perinatal SERT expression in CA3 pyramidal neurons.; Development, 149: [no pages]		GSE214392
De Jesus, Dario F et al. (2023) NREP contributes to development of NAFLD by regulating one-carbon metabolism in primary human hepatocytes.; Cell Chem Biol, 30: 1144-1155.e4		GSE229455
de Jong, Job O et al. (2021) Cortical overgrowth in a preclinical forebrain organoid model of CNTNAP2-associated autism spectrum disorder.; Nat Commun, 12: 4087		GSE174569.1
de Jong, Simone et al. (2010) Gene expression profiling in C57BL/6J and A/J mouse inbred strains reveals gene networks specific for brain regions independent of genetic background.; BMC Genomics, 11: 20		GSE17955
de Jong, Simone et al. (2011) Hippocampal gene expression analysis highlights Ly6a/Sca-1 as candidate gene for previously mapped novelty induced behaviors in mice.; PLoS One, 6: e20716		GSE29289
de Jong, Simone et al. (2012) A gene co-expression network in whole blood of schizophrenia patients is independent of antipsychotic-use and enriched for brain-expressed genes.; PLoS One, 7: e39498		GSE38485.2   GSE38485.1
de Jonge, H J M et al. (2011) Gene expression profiling in the leukemic stem cell-enriched CD34+ fraction identifies target genes that predict prognosis in normal karyotype AML.; Leukemia, [no vol.]: [no pages]		GSE30029
de Jonge, Hendrik J M et al. (2010) High VEGFC expression is associated with unique gene expression profiles and predicts adverse prognosis in pediatric and adult acute myeloid leukemia.; Blood, 116: 1747-54		GSE6891
de Jonge, J et al. (2009) Unique early gene expression patterns in human adult-to-adult living donor liver grafts compared to deceased donor grafts.; Am J Transplant, 9: 758-72		GSE12720
De Keersmaecker, Kim et al. (2010) The TLX1 oncogene drives aneuploidy in T cell transformation.; Nat Med, 16: 1321-7		GSE19499
De Koninck, Magali et al. (2020) Essential Roles of Cohesin STAG2 in Mouse Embryonic Development and Adult Tissue Homeostasis.; Cell Rep, 32: 108014		GSE152298
de Kovel, Carolien G F et al. (2018) Subtle left-right asymmetry of gene expression profiles in embryonic and foetal human brains.; Sci Rep, 8: 12606		GSE99302
De Kumar, Bony et al. [Unknown date]Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells.; Proc Natl Acad Sci U S A, 114: 5838-5845		GSE67610
De la Cruz-Hernández, Erick et al. (2011) Transcriptional changes induced by epigenetic therapy with hydralazine and magnesium valproate in cervical carcinoma.; Oncol Rep, 25: 399-407		GSE8604
de la Fuente Revenga, Mario et al. (2021) Prolonged epigenomic and synaptic plasticity alterations following single exposure to a psychedelic in mice.; Cell Rep, 37: 109836		GSE161626
De La Fuente, Daniel Cabezas et al. (2024) Impaired oxysterol-liver X receptor signaling underlies aberrant cortical neurogenesis in a stem cell model of neurodevelopmental disorder.; Cell Rep, 43: 113946		GSE119316
de la Nava, Daniel et al. (2024) The oncolytic adenovirus Delta-24-RGD in combination with ONC201 induces a potent antitumor response in pediatric high-grade and diffuse midline glioma models.; Neuro Oncol, 26: 1509-1525		GSE255971   GSE243223
de la Peña, June Bryan et al. (2023) Inhibition of Nonsense-Mediated Decay Induces Nociceptive Sensitization through Activation of the Integrated Stress Response.; J Neurosci, 43: 2921-2933		GSE211127
de Leeuw, Victoria C et al. (2021) Exploring the biological domain of the neural embryonic stem cell test (ESTn): Morphogenetic regulators, Hox genes and cell types, and their usefulness as biomarkers for embryotoxicity screening.; Toxicology, 454: 152735		GSE153836
de Leeuw, Victoria C et al. (2022) Neuronal differentiation pathways and compound-induced developmental neurotoxicity in the human neural progenitor cell test (hNPT) revealed by RNA-seq.; Chemosphere, 304: 135298		GSE166297
De Leo, Alessandra et al. (2024) Glucose-driven histone lactylation promotes the immunosuppressive activity of monocyte-derived macrophages in glioblastoma.; Immunity, 57: 1105-1123.e8		GSE260701
de Lucia, Chiara et al. (2021) Serum from Older Adults Increases Apoptosis and Molecular Aging Markers in Human Hippocampal Progenitor Cells.; Aging Dis, 12: 2151-2172		GSE106403
De Maria, Alicia et al. (2015) Birc7: A Late Fiber Gene of the Crystalline Lens.; Invest Ophthalmol Vis Sci, 56: 4823-34		GSE205379
de Melo, Jimmy et al. (2011) The Spalt family transcription factor Sall3 regulates the development of cone photoreceptors and retinal horizontal interneurons.; Development, 138: 2325-36		GSE24083
de Melo, Jimmy et al. (2016) Lhx2 Is an Essential Factor for Retinal Gliogenesis and Notch Signaling.; J Neurosci, 36: 2391-405		GSE75889
de Mendoza, Alex et al. (2022) Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability.; Genome Biol, 23: 163		GSE102395
De Meyer, T et al. (2009) E2Fs mediate a fundamental cell-cycle deregulation in high-grade serous ovarian carcinomas.; J Pathol, 217: 14-20		GSE12471
De Mori, Roberta et al. (2024) Joubert syndrome-derived induced pluripotent stem cells show altered neuronal differentiation in vitro.; Cell Tissue Res, 396: 255-267		GSE254556
De Nardo, Dominic et al. (2014) High-density lipoprotein mediates anti-inflammatory reprogramming of macrophages via the transcriptional regulator ATF3.; Nat Immunol, 15: 152-60		GSE44034
De Nittis, Pasquelena et al. (2021) Inhibition of G-protein signalling in cardiac dysfunction of intellectual developmental disorder with cardiac arrhythmia (IDDCA) syndrome.; J Med Genet, 58: 815-831		GSE156898
de Nooij, Joriene C et al. (2015) The PDZ-domain protein Whirlin facilitates mechanosensory signaling in mammalian proprioceptors.; J Neurosci, 35: 3073-84		GSE64941
de Oliveira, Gabriela P et al. (2013) Early gene expression changes in spinal cord from SOD1(G93A) Amyotrophic Lateral Sclerosis animal model.; Front Cell Neurosci, 7: 216		GSE50642
De Pace, Raffaella et al. (2024) Messenger RNA transport on lysosomal vesicles maintains axonal mitochondrial homeostasis and prevents axonal degeneration.; Nat Neurosci, [no vol.]: [no pages]		GSE225479
de Paula A Sousa, Alessandra et al. (2015) Autologous haematopoietic stem cell transplantation reduces abnormalities in the expression of immune genes in multiple sclerosis.; Clin Sci (Lond), 128: 111-20		GSE32988
de Paula Careta, Francisco et al. (2012) The Aurora A and B kinases are up-regulated in bone marrow-derived chronic lymphocytic leukemia cells and represent potential therapeutic targets.; Haematologica, 97: 1246-54		GSE30896
De Rienzo, Assunta et al. (2013) Sequential binary gene ratio tests define a novel molecular diagnostic strategy for malignant pleural mesothelioma.; Clin Cancer Res, 19: 2493-502		GSE42977
De Rienzo, Assunta et al. (2021) Association ofRERGExpression with Female Survival Advantage in Malignant Pleural Mesothelioma.; Cancers (Basel), 13: [no pages]		GSE163721
de Ronde, Jorma J et al. (2013) Identifying subgroup markers in heterogeneous populations.; Nucleic Acids Res, [no vol.]: [no pages]		GSE41656
de Ronde, Jorma J et al. (2013) SERPINA6, BEX1, AGTR1, SLC26A3, and LAPTM4B are markers of resistance to neoadjuvant chemotherapy in HER2-negative breast cancer.; Breast Cancer Res Treat, 137: 213-23		GSE34138
De Rosa, Maria Caterina et al. (2021) Gene expression atlas of energy balance brain regions.; JCI Insight, 6: [no pages]		GSE178290
De Schutter, Tim et al. (2013) Cidofovir selectivity is based on the different response of normal and cancer cells to DNA damage.; BMC Med Genomics, 6: 18		GSE26748   GSE39293
De Toma, I et al. (2018) Overweight Mice Show Coordinated Homeostatic and Hedonic Transcriptional Response across Brain.; eNeuro, 5: [no pages]		GSE100012
de Verteuil, Danielle A et al. (2014) Immunoproteasomes shape the transcriptome and regulate the function of dendritic cells.; J Immunol, 193: 1121-32		GSE52616
De Virgiliis, Francesco et al. (2023) The circadian clock time tunes axonal regeneration.; Cell Metab, 35: 2153-2164.e4		GSE235687
de Vogel-van den Bosch, Heleen M et al. (2008) PPARalpha-mediated effects of dietary lipids on intestinal barrier gene expression.; BMC Genomics, 9: 231		GSE9533
de Vos, Paul et al. (2017) Lactobacillus plantarumStrains Can Enhance Human Mucosal and Systemic Immunity and Prevent Non-steroidal Anti-inflammatory Drug Induced Reduction in T Regulatory Cells.; Front Immunol, 8: 1000		GSE74988
de Vries, Luuk E et al. (2024) Gene-expression profiling of individuals resilient to Alzheimer's disease reveals higher expression of genes related to metallothionein and mitochondrial processes and no changes in the unfolded protein response.; Acta Neuropathol Commun, 12: 68		GSE261817
de Weerd, Nicole A et al. (2013) Structural basis of a unique interferon-? signaling axis mediated via the receptor IFNAR1.; Nat Immunol, 14: 901-7		GSE48827
de Wilde, Janneke et al. (2009) An 8-week high-fat diet induces obesity and insulin resistance with small changes in the muscle transcriptome of C57BL/6J mice.; J Nutrigenet Nutrigenomics, 2: 280-91		GSE17576
de Wilde, Janneke et al. (2010) The embryonic genes Dkk3, Hoxd8, Hoxd9 and Tbx1 identify muscle types in a diet-independent and fiber-type unrelated way.; BMC Genomics, 11: 176		GSE18127
de Wit, Nicole J W et al. (2011) Dose-dependent effects of dietary fat on development of obesity in relation to intestinal differential gene expression in C57BL/6J mice.; PLoS One, 6: e19145		GSE26300
de Wit, Nicole Jw et al. (2008) The role of the small intestine in the development of dietary fat-induced obesity and insulin resistance in C57BL/6J mice.; BMC Med Genomics, 1: 14		GSE8582
de Yébenes, Virginia G et al. (2014) miR-217 is an oncogene that enhances the germinal center reaction.; Blood, 124: 229-39		GSE47877
De, Ishani et al. (2021) Microglial responses to CSF1 overexpression do not promote the expansion of other glial lineages.; J Neuroinflammation, 18: 162		GSE151698
De, Shrutokirti et al. (2019) Correction: Two distinct ontogenies confer heterogeneity to mouse brain microglia (doi: 10.1242/dev.152306).; Development, 146: [no pages]		GSE124710
De, Supriyo et al. (2010) PCB congener specific oxidative stress response by microarray analysis using human liver cell line.; Environ Int, 36: 907-17		GSE6878
Dean, Matthew J et al. (2021) Severe COVID-19 Is Characterized by an Impaired Type I Interferon Response and Elevated Levels of Arginase Producing Granulocytic Myeloid Derived Suppressor Cells.; Front Immunol, 12: 695972		GSE178824
Dean, P G et al. (2012) Intragraft gene expression in positive crossmatch kidney allografts: ongoing inflammation mediates chronic antibody-mediated injury.; Am J Transplant, 12: 1551-63		GSE34748
Dean, Terry et al. (2024) Fibrin promotes oxidative stress and neuronal loss in traumatic brain injury via innate immune activation.; J Neuroinflammation, 21: 94		GSE253476
Deaton, Aimée M et al. (2011) Cell type-specific DNA methylation at intragenic CpG islands in the immune system.; Genome Res, 21: 1074-86		GSE25578
Debey-Pascher, Svenja et al. (2011) RNA-stabilized whole blood samples but not peripheral blood mononuclear cells can be stored for prolonged time periods prior to transcriptome analysis.; J Mol Diagn, 13: 452-60		GSE24753   GSE24755   GSE24757
Deblois, Geneviève et al. (2016) ERR? mediates metabolic adaptations driving lapatinib resistance in breast cancer.; Nat Commun, 7: 12156		GSE81546
Debnath, Irina et al. (2013) Bone marrow-induced Mef2c deficiency delays B-cell development and alters the expression of key B-cell regulatory proteins.; Int Immunol, 25: 99-115		GSE34210
DeBoer, E M et al. (2013) Post-transcriptional regulatory elements and spatiotemporal specification of neocortical stem cells and projection neurons.; Neuroscience, 248: 499-528		GSE61751
Dec, Karolina et al. (2023) A high ratio of linoleic acid (n-6 PUFA) to alpha-linolenic acid (n-3 PUFA) adversely affects early stage of human neuronal differentiation and electrophysiological activity of glutamatergic neuronsin vitro.; Front Cell Dev Biol, 11: 1166808		GSE228997
Decker, Keith F et al. (2012) Persistent androgen receptor-mediated transcription in castration-resistant prostate cancer under androgen-deprived conditions.; Nucleic Acids Res, 40: 10765-79		GSE40050
Decker, Tim-Michael et al. (2017) Transcriptome analysis of dominant-negative Brd4 mutants identifies Brd4-specific target genes of small molecule inhibitor JQ1.; Sci Rep, 7: 1684		GSE92456
Decock, Anneleen et al. (2012) Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers.; Genome Biol, 13: R95		GSE31229
Decombis, Salomé et al. (2022) The IL32/BAFF axis supports prosurvival dialogs in the lymphoma ecosystem and is disrupted by NIK inhibition.; Haematologica, 107: 2905-2917		GSE179766   GSE179636
Deczkowska, Aleksandra et al. [Unknown date]Mef2C restrains microglial inflammatory response and is lost in brain ageing in an IFN-I-dependent manner.; Nat Commun, 8: 717		GSE98401
Deehan, Renée et al. (2012) Comparative transcriptional network modeling of three PPAR-?/? co-agonists reveals distinct metabolic gene signatures in primary human hepatocytes.; PLoS One, 7: e35012		GSE33152
DeFalco, Tony et al. (2011) Two distinct origins for Leydig cell progenitors in the fetal testis.; Dev Biol, 352: 14-26		GSE41715
Defaye, Manon et al. (2022) The neuronal tyrosine kinase receptor ligand ALKAL2 mediates persistent pain.; J Clin Invest, 132: [no pages]		GSE201227
Deferme, L et al. (2013) Time series analysis of oxidative stress response patterns in HepG2: a toxicogenomics approach.; Toxicology, 306: 24-34		GSE39291
Deffenbacher, Karen E et al. (2010) Recurrent chromosomal alterations in molecularly classified AIDS-related lymphomas: an integrated analysis of DNA copy number and gene expression.; J Acquir Immune Defic Syndr, 54: 18-26		GSE17372
Deforzh, Evgeny et al. (2023) HOXDeRNA activates a cancerous transcription program and super-enhancers genome-wide.; bioRxiv, [no vol.]: [no pages]		GSE227802
DeGeer, Jonathan et al. (2022) Ral GTPases are critical regulators of spinal cord myelination and homeostasis.; Cell Rep, 40: 111413		GSE180725
Degorre, Charlotte et al. (2022) Glioblastoma cells have increased capacity to repair radiation-induced DNA damage after migration to the olfactory bulb.; Cancer Cell Int, 22: 389		GSE212161
Degorre, Charlotte et al. (2024) Targeting PRMT5 enhances the radiosensitivity of tumor cells grown in vitro and in vivo.; Sci Rep, 14: 17316		GSE264609
Degroat, Thomas J et al. (2024) Chronic stress and its effects on behavior, RNA expression of the bed nucleus of the stria terminalis, and the M-current of NPY neurons.; Psychoneuroendocrinology, 161: 106920		GSE235108
Dehan, E et al. (2007) Chromosomal aberrations and gene expression profiles in non-small cell lung cancer.; Lung Cancer, 56: 175-84		GSE1987
Dehm, Verena et al. (2024) Molecular Analysis of the Differential Activity of Sox8 and Sox10 in Oligodendroglial Cells.; Int J Mol Sci, 25: [no pages]		GSE280389
Deisenroth, Chad et al. (2014) MYC is an early response regulator of human adipogenesis in adipose stem cells.; PLoS One, 9: e114133		GSE57538
Dejanovic, Borislav et al. (2022) Complement C1q-dependent excitatory and inhibitory synapse elimination by astrocytes and microglia in Alzheimer's disease mouse models.; Nat Aging, 2: 837-850		GSE186414
Dekervel, Jeroen et al. (2017) Acriflavine Inhibits Acquired Drug Resistance by Blocking the Epithelial-to-Mesenchymal Transition and the Unfolded Protein Response.; Transl Oncol, 10: 59-69		GSE82293   GSE82110