List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Ciuffoli, Veronica et al. (2024) Psat1-generated α-ketoglutarate and glutamine promote muscle stem cell activation and regeneration.; Genes Dev, 38: 151-167 |
|
GSE248911 GSE248913 |
| Ciurkiewicz, Malgorzata et al. (2021) Transcriptome analysis following neurotropic virus infection reveals faulty innate immunity and delayed antigen presentation in mice susceptible to virus-induced demyelination.; Brain Pathol, 31: e13000 |
|
GSE159226 |
| Cizkova, Magdalena et al. (2010) Gene expression profiling reveals new aspects of PIK3CA mutation in ERalpha-positive breast cancer: major implication of the Wnt signaling pathway.; PLoS One, 5: e15647 |
|
GSE22035 |
| Clackson, Oliver et al. (2024) Exposure to the organochlorine pesticide cis-chlordane induces ALS-like mitochondrial perturbations in stem cell-derived motor neurons.; PLoS One, 20: e0332422 |
|
GSE307375 |
| Claes, Marie et al. (2022) Chronic Chemogenetic Activation of the Superior Colliculus in Glaucomatous Mice: Local and Retrograde Molecular Signature.; Cells, 11: [no pages] |
|
GSE202012 |
| Claeys, Wouter et al. (2023) Experimental hepatic encephalopathy causes early but sustained glial transcriptional changes.; J Neuroinflammation, 20: 130 |
|
GSE230287 |
| Clamer, Massimiliano et al. (2018) Active Ribosome Profiling with RiboLace.; Cell Rep, 25: 1097-1108.e5 |
|
GSE112295 |
| Clancy, Hailey A et al. (2012) Gene expression changes in human lung cells exposed to arsenic, chromium, nickel or vanadium indicate the first steps in cancer.; Metallomics, 4: 784-93 |
|
GSE36684 |
| Clare, Alison J et al. (2017) RNA-Sequencing Analysis Reveals a Regulatory Role for Transcription FactorFezf2in the Mature Motor Cortex.; Front Mol Neurosci, 10: 283 |
|
GSE102365 |
| Clare, Alison J et al. (2018) Transcriptome Profiling of Layer 5 Intratelencephalic Projection Neurons From the Mature Mouse Motor Cortex.; Front Mol Neurosci, 11: 410 |
|
GSE107586 |
| Clark, Alex J et al. (2021) An iPSC model of hereditary sensory neuropathy-1 reveals L-serine-responsive deficits in neuronal ganglioside composition and axoglial interactions.; Cell Rep Med, 2: 100345 |
|
GSE144208 |
| Clark, Danielle N et al. (2023) Prolonged STAT1 activation in neurons drives a pathological transcriptional response.; J Neuroimmunol, 382: 578168 |
|
GSE232304 |
| Clark, Erin A et al. (2020) Cortical RORβ is required for layer 4 transcriptional identity and barrel integrity.; Elife, 9: [no pages] |
|
GSE138001 |
| Clark, Iain C et al. (2021) Barcoded viral tracing of single-cell interactions in central nervous system inflammation.; Science, 372: [no pages] |
|
GSE149052 GSE149105 |
| Clark, Rachel N et al. (2026) Testing an inverse link between limbic alpha-synucleinopathy and myelin markers in mice and humans.; NPJ Parkinsons Dis, 12: [no pages] |
|
GSE297212 |
| Clark, Sean C et al. (2020) Differential nucleosome spacing in neurons and glia.; Neurosci Lett, 714: 134559 |
|
GSE133745 |
| Clark, Victoria E et al. (2013) Genomic analysis of non-NF2 meningiomas reveals mutations in TRAF7, KLF4, AKT1, and SMO.; Science, 339: 1077-80 |
|
GSE58037 |
| Clarke, Benjamin E et al. (2024) Human VCP mutant ALS/FTD microglia display immune and lysosomal phenotypes independently of GPNMB.; Mol Neurodegener, 19: 90 |
|
GSE282665.2 GSE282665.1 |
| Clarke, Colin et al. (2013) Correlating transcriptional networks to breast cancer survival: a large-scale coexpression analysis.; Carcinogenesis, 34: 2300-8 |
|
GSE42568 |
| Clarke, Jelani et al. (2020) Vitamin D Regulates MerTK-Dependent Phagocytosis in Human Myeloid Cells.; J Immunol, 205: 398-406 |
|
GSE148986 |
| Clarke, Penny et al. (2014) Virus-induced transcriptional changes in the brain include the differential expression of genes associated with interferon, apoptosis, interleukin 17 receptor A, and glutamate signaling as well as flavivirus-specific upregulation of tRNA synthetases.; MBio, 5: e00902-14 |
|
GSE53784 |
| Clarkson, Benjamin Ds et al. (2023) CD8+ T cells recognizing a neuron-restricted antigen injure axons in a model of multiple sclerosis.; J Clin Invest, 133: [no pages] |
|
GSE241781 |
| Classen, Sabine et al. (2010) Application of T cell-based transcriptomics to identify three candidate biomarkers for monitoring anti-TGFbetaR therapy.; Pharmacogenet Genomics, 20: 147-56 |
|
GSE15468 |
| Claus, Elizabeth B et al. (2008) Specific genes expressed in association with progesterone receptors in meningioma.; Cancer Res, 68: 314-22 |
|
GSE9438 |
| Clausen, Thomas Mandel et al. (2025) Antithrombin-binding heparan sulfate is ubiquitously expressed in epithelial cells and suppresses pancreatic tumorigenesis.; J Clin Invest, 135: [no pages] |
|
GSE270542 |
| Clayberger, Carol et al. (2012) 15 kDa granulysin causes differentiation of monocytes to dendritic cells but lacks cytotoxic activity.; J Immunol, 188: 6119-26 |
|
GSE35304 |
| Clayton, Benjamin L L et al. (2024) A phenotypic screening platform for identifying chemical modulators of astrocyte reactivity.; Nat Neurosci, 27: 656-665 |
|
GSE185212 GSE230817 |
| Clelland, Catherine L et al. (2013) Utilization of never-medicated bipolar disorder patients towards development and validation of a peripheral biomarker profile.; PLoS One, 8: e69082 |
|
GSE46449 |
| Clemens, Adam W et al. (2020) MeCP2 Represses Enhancers through Chromosome Topology-Associated DNA Methylation.; Mol Cell, 77: 279-293.e8 |
|
GSE123372 |
| Clement, Tracy M et al. (2010) Alterations in the developing testis transcriptome following embryonic vinclozolin exposure.; Reprod Toxicol, 30: 353-64 |
|
GSE20245 |
| Clements, Meghan et al. (2016) Differential Ly6C Expression after Renal Ischemia-Reperfusion Identifies Unique Macrophage Populations.; J Am Soc Nephrol, 27: 159-70 |
|
GSE75808 |
| Clements, Melanie P et al. (2017) The Wound Microenvironment Reprograms Schwann Cells to Invasive Mesenchymal-like Cells to Drive Peripheral Nerve Regeneration.; Neuron, 96: 98-114.e7 |
|
GSE103039.2 GSE103039.1 |
| Clemmensen, Anders et al. (2010) Genome-wide expression analysis of human in vivo irritated epidermis: differential profiles induced by sodium lauryl sulfate and nonanoic acid.; J Invest Dermatol, 130: 2201-10 |
|
GSE18206 |
| Clerch, Linda Biadasz et al. (2004) DNA microarray analysis of neonatal mouse lung connects regulation of KDR with dexamethasone-induced inhibition of alveolar formation.; Am J Physiol Lung Cell Mol Physiol, 286: L411-9 |
|
GSE484 |
| Cleverley, Tesia L et al. (2023) The host-directed therapeutic imatinib mesylate accelerates immune responses to Mycobacterium marinum infection and limits pathology associated with granulomas.; PLoS Pathog, 19: e1011387 |
|
GSE215176 |
| Clewell, H J et al. (2011) Concentration- and time-dependent genomic changes in the mouse urinary bladder following exposure to arsenate in drinking water for up to 12 weeks.; Toxicol Sci, 123: 421-32 |
|
GSE32102 |
| Cliff, Jacqueline M et al. (2013) Distinct phases of blood gene expression pattern through tuberculosis treatment reflect modulation of the humoral immune response.; J Infect Dis, [no vol.]: [no pages] |
|
GSE31348 GSE36238 |
| Clifford, Harry et al. (2019) A gene expression signature in developing Purkinje cells predicts autism and intellectual disability co-morbidity status.; Sci Rep, 9: 485 |
|
GSE86824 |
| Clifton, Nicholas E et al. (2022) Developmental disruption to the cortical transcriptome and synaptosome in a model of SETD1A loss-of-function.; Hum Mol Genet, 31: 3095-3106 |
|
GSE199428 |
| Clinton, Sarah M et al. (2011) Developmental underpinnings of differences in rodent novelty-seeking and emotional reactivity.; Eur J Neurosci, 34: 994-1005 |
|
GSE29552 |
| Clodfelter, Karl H et al. (2007) Role of STAT5a in regulation of sex-specific gene expression in female but not male mouse liver revealed by microarray analysis.; Physiol Genomics, 31: 63-74 |
|
GSE7169 |
| Close, Jennie L et al. (2017) Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation.; Neuron, 93: 1035-1048.e5 |
|
GSE93801 |
| Clouaire, Thomas et al. (2014) Cfp1 is required for gene expression-dependent H3K4 trimethylation and H3K9 acetylation in embryonic stem cells.; Genome Biol, 15: 451 |
|
GSE53489 |
| Clovis, Yoanne M et al. (2012) Convergent repression of Foxp2 3'UTR by miR-9 and miR-132 in embryonic mouse neocortex: implications for radial migration of neurons.; Development, 139: 3332-42 |
|
GSE37610 |
| Clovis, Yoanne M et al. (2016) Chx10 Consolidates V2a Interneuron Identity through Two Distinct Gene Repression Modes.; Cell Rep, 16: 1642-1652 |
|
GSE83874 |
| Cluzeau, Celine V M et al. (2012) Microarray expression analysis and identification of serum biomarkers for Niemann-Pick disease, type C1.; Hum Mol Genet, 21: 3632-46 |
|
GSE33467 |
| Clément, Karine et al. (2002) In vivo regulation of human skeletal muscle gene expression by thyroid hormone.; Genome Res, 12: 281-91 |
|
GSE4345 |
| Clément-Ziza, Mathieu et al. (2009) Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling.; BMC Genomics, 10: 246 |
|
GSE15398 |
| Coarfa, Christian et al. (2018) Influence of the neural microenvironment on prostate cancer.; Prostate, 78: 128-139 |
|
GSE28717 |
| Cobos, Enrique J et al. (2018) Mechanistic Differences in Neuropathic Pain Modalities Revealed by Correlating Behavior with Global Expression Profiling.; Cell Rep, 22: 1301-1312 |
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GSE89224 GSE102721 |
| Cobos, Inma et al. (2007) Dlx transcription factors promote migration through repression of axon and dendrite growth.; Neuron, 54: 873-88 |
|
GSE2161 |
| Cocce, Kimberly J et al. (2019) The Lineage Determining Factor GRHL2 Collaborates with FOXA1 to Establish a Targetable Pathway in Endocrine Therapy-Resistant Breast Cancer.; Cell Rep, 29: 889-903.e10 |
|
GSE106681 GSE106694 |
| Coccia, Margherita et al. (2022) Subsequent AS01-adjuvanted vaccinations induce similar transcriptional responses in populations with different disease statuses.; PLoS One, 17: e0276505 |
|
GSE197408 |
| Cocco, Mario et al. (2012) In vitro generation of long-lived human plasma cells.; J Immunol, 189: 5773-85 |
|
GSE41208 |
| Cocks, Graham et al. (2013) Conditionally immortalized stem cell lines from human spinal cord retain regional identity and generate functional V2a interneurons and motorneurons.; Stem Cell Res Ther, 4: 69 |
|
GSE37282 |
| Codega, Paolo et al. (2014) Prospective identification and purification of quiescent adult neural stem cells from their in vivo niche.; Neuron, 82: 545-59 |
|
GSE54653 |
| Coffey, Sydney R et al. (2017) Peripheral huntingtin silencing does not ameliorate central signs of disease in the B6.HttQ111/+ mouse model of Huntington's disease.; PLoS One, 12: e0175968 |
|
GSE97101 |
| Coffin, Stephanie L et al. (2022) Disruption of the ATXN1-CIC complex reveals the role of additional nuclear ATXN1 interactors in spinocerebellar ataxia type 1.; Neuron, [no vol.]: [no pages] |
|
GSE218283 |
| Cohen, Andrea J et al. (2017) Hotspots of aberrant enhancer activity punctuate the colorectal cancer epigenome.; Nat Commun, 8: 14400 |
|
GSE77737 |
| Cohen, David P A et al. (2020) Effects of repetitive Iodine thyroid blocking on the foetal brain and thyroid in rats: a systems biology approach.; Sci Rep, 10: 10839 |
|
GSE148280 GSE148253 |
| Cohen, Ezra E W et al. (2009) A feed-forward loop involving protein kinase Calpha and microRNAs regulates tumor cell cycle.; Cancer Res, 69: 65-74 |
|
GSE10300 |
| Cohen, Idan et al. (2012) ZNF750 is expressed in differentiated keratinocytes and regulates epidermal late differentiation genes.; PLoS One, 7: e42628 |
|
GSE38039 |
| Cohen, Jennifer et al. (2007) Perturbation of gene expression of the chromatin remodeling pathway in premature newborns at risk for bronchopulmonary dysplasia.; Genome Biol, 8: R210 |
|
GSE8586 |
| Cohen, Jonathan E et al. (2014) Systematic identification of 3'-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons.; Philos Trans R Soc Lond B Biol Sci, 369: [no pages] |
|
GSE55780 |
| Cohen, Joshua L et al. (2014) Maternal Style Selectively Shapes Amygdalar Development and Social Behavior in Rats Genetically Prone to High Anxiety.; Dev Neurosci, 37: 203-14 |
|
GSE88874 |
| Cohen, Joshua L et al. (2017) Differential stress induced c-Fos expression and identification of region-specific miRNA-mRNA networks in the dorsal raphe and amygdala of high-responder/low-responder rats.; Behav Brain Res, 319: 110-123 |
|
GSE86936 GSE86893 |
| Cohen, Lorenzo et al. (2012) Depressive symptoms and cortisol rhythmicity predict survival in patients with renal cell carcinoma: role of inflammatory signaling.; PLoS One, 7: e42324 |
|
GSE36957 |
| Cohen, Merav et al. (2014) Chronic exposure to TGF?1 regulates myeloid cell inflammatory response in an IRF7-dependent manner.; EMBO J, 33: 2906-21 |
|
GSE62698 |
| Cohen, Sonia et al. (2011) Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function.; Neuron, 72: 72-85 |
|
GSE31850 GSE31849 |
| Cohen, Y et al. (2012) Niche-modulated and niche-modulating genes in bone marrow cells.; Blood Cancer J, 2: e97 |
|
GSE36036 |
| Cohen-Kupiec, Rachel et al. (2011) Effects of IKAP/hELP1 deficiency on gene expression in differentiating neuroblastoma cells: implications for familial dysautonomia.; PLoS One, 6: e19147 |
|
GSE26458 |
| Cohn, Erin F et al. (2023) Pervasive environmental chemicals impair oligodendrocyte development.; bioRxiv, [no vol.]: [no pages] |
|
GSE244500 |
| Coker, Caitlin R et al. (2022) Minocycline Reduces Hypothalamic Microglia Activation and Improves Metabolic Dysfunction in High Fat Diet-Induced Obese Mice.; Front Physiol, 13: 933706 |
|
GSE198437 |
| Colameo, David et al. (2021) Pervasive compartment-specific regulation of gene expression during homeostatic synaptic scaling.; EMBO Rep, 22: e52094 |
|
GSE155540 |
| Colantuoni, Carlo et al. (2011) Temporal dynamics and genetic control of transcription in the human prefrontal cortex.; Nature, 478: 519-23 |
|
GSE30272 |
| Colasante, Gaia et al. (2009) Arx acts as a regional key selector gene in the ventral telencephalon mainly through its transcriptional repression activity.; Dev Biol, 334: 59-71 |
|
GSE12956 |
| Colasante, Gaia et al. (2015) Rapid Conversion of Fibroblasts into Functional Forebrain GABAergic Interneurons by Direct Genetic Reprogramming.; Cell Stem Cell, 17: 719-734 |
|
GSE74065 |
| Colasante, Gaia et al. (2019) dCas9-Based Scn1a Gene Activation Restores Inhibitory Interneuron Excitability and Attenuates Seizures in Dravet Syndrome Mice.; Mol Ther, [no vol.]: [no pages] |
|
GSE111436 |
| Colasante, Gaia et al. (2020) In vivo CRISPRa decreases seizures and rescues cognitive deficits in a rodent model of epilepsy.; Brain, 143: 891-905 |
|
GSE133554 GSE133929 |
| Colciago, Alessandra et al. (2021) Transcriptomic Profile Reveals Deregulation of Hearing-Loss Related Genes in Vestibular Schwannoma Cells Following Electromagnetic Field Exposure.; Cells, 10: [no pages] |
|
GSE174389 |
| Coldren, Christopher D et al. (2006) Baseline gene expression predicts sensitivity to gefitinib in non-small cell lung cancer cell lines.; Mol Cancer Res, 4: 521-8 |
|
GSE4342 |
| Coldren, Christopher D et al. (2006) Functional and genomic changes induced by alveolar transmigration in human neutrophils.; Am J Physiol Lung Cell Mol Physiol, 291: L1267-76 |
|
GSE2322 |
| Cole, Alexander J et al. (2023) Quiescent Ovarian Cancer Cells Secrete Follistatin to Induce Chemotherapy Resistance in Surrounding Cells in Response to Chemotherapy.; Clin Cancer Res, 29: 1969-1983 |
|
GSE210439 |
| Cole, Kristina A et al. (2011) RNAi screen of the protein kinome identifies checkpoint kinase 1 (CHK1) as a therapeutic target in neuroblastoma.; Proc Natl Acad Sci U S A, 108: 3336-41 |
|
GSE19274 |
| Cole, Laura K et al. (2021) Tafazzin Deficiency Reduces Basal Insulin Secretion and Mitochondrial Function in Pancreatic Islets From Male Mice.; Endocrinology, 162: [no pages] |
|
GSE136242 |
| Cole, Steve W et al. (2007) Social regulation of gene expression in human leukocytes.; Genome Biol, 8: R189 |
|
GSE7148 |
| Cole, Steven W et al. (2011) Transcript origin analysis identifies antigen-presenting cells as primary targets of socially regulated gene expression in leukocytes.; Proc Natl Acad Sci U S A, 108: 3080-5 |
|
GSE25837 |
| Cízková, Alena et al. (2008) TMEM70 mutations cause isolated ATP synthase deficiency and neonatal mitochondrial encephalocardiomyopathy.; Nat Genet, 40: 1288-90 |
|
GSE10956 |