List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Isoda, Miho et al. (2023) Mesenchymal properties of iPSC-derived neural progenitors that generate undesired grafts after transplantation.; Commun Biol, 6: 611 |
|
GSE188440 GSE225719 GSE166051 |
| Isogaya, Kazunobu et al. (2014) A Smad3 and TTF-1/NKX2-1 complex regulates Smad4-independent gene expression.; Cell Res, 24: 994-1008 |
|
GSE49675 |
| Isola, José V V et al. (2024) A single-cell atlas of the aging mouse ovary.; Nat Aging, 4: 145-162 |
|
GSE232309 |
| Isoyama, Sho et al. (2023) Subtype-selective induction of apoptosis in translocation-related sarcoma cells induced by PUMA and BIM upon treatment with pan-PI3K inhibitors.; Cell Death Dis, 14: 169 |
|
GSE221131 |
| Israel, Mason A et al. (2012) Probing sporadic and familial Alzheimer's disease using induced pluripotent stem cells.; Nature, 482: 216-20 |
|
GSE34879 |
| Israelsson, Charlotte et al. (2014) Interacting chemokine signals regulate dendritic cells in acute brain injury.; PLoS One, 9: e104754 |
|
GSE58484 GSE58483 |
| Issa, Amine N et al. (2016) Association of Cognitive Performance with Time at Altitude, Sleep Quality, and Acute Mountain Sickness Symptoms.; Wilderness Environ Med, 27: 371-8 |
|
GSE46480 |
| Issler, Orna et al. (2022) The long noncoding RNA FEDORA is a cell type- and sex-specific regulator of depression.; Sci Adv, 8: eabn9494 |
|
GSE188930 |
| Istiaq, Arif et al. (2022) Tsukushi proteoglycan maintains RNA splicing and developmental signaling network in GFAP-expressing subventricular zone neural stem/progenitor cells.; Front Cell Dev Biol, 10: 994588 |
|
GSE205788 |
| Itadani, Hiraku et al. (2009) Mouse gastric tumor models with prostaglandin E2 pathway activation show similar gene expression profiles to intestinal-type human gastric cancer.; BMC Genomics, 10: 615 |
|
GSE16902 |
| Itakura, Hiroaki et al. (2023) Tumor-suppressive role of themusculoaponeuroticfibrosarcomagene in colorectal cancer.; iScience, 26: 106478 |
|
GSE92944 |
| Itkin, Tomer et al. (2023) Transcriptional Activation of Regenerative Hematopoiesis via Vascular Niche Sensing.; bioRxiv, [no vol.]: [no pages] |
|
GSE171111 |
| Itkin, Tomer et al. (2025) Transcriptional activation of regenerative hematopoiesis via microenvironmental sensing.; Nat Immunol, 26: 378-390 |
|
GSE171112 |
| Itkonen, Harri M et al. (2013) O-GlcNAc transferase integrates metabolic pathways to regulate the stability of c-MYC in human prostate cancer cells.; Cancer Res, [no vol.]: [no pages] |
|
GSE44624 |
| Itkonen, Harri M et al. (2017) Lipid degradation promotes prostate cancer cell survival.; Oncotarget, 8: 38264-38275 |
|
GSE75035 |
| Itkonen, Harri M et al. (2019) High OGT activity is essential for MYC-driven proliferation of prostate cancer cells.; Theranostics, 9: 2183-2197 |
|
GSE121472 |
| Ito, Hikaru et al. (2021) Activation of proprotein convertase in the mouse habenula causes depressive-like behaviors through remodeling of extracellular matrix.; Neuropsychopharmacology, 46: 442-454 |
|
GSE156965 |
| Ito, Hiroshi et al. (2026) Gene expression changes in lymphocytes and monocytes from patients with traumatic brain injury.; Sci Rep, 16: [no pages] |
|
GSE285385 |
| Ito, Keiichi et al. (2021) Critical roles of transcriptional coactivator MED1 in the formation and function of mouse adipose tissues.; Genes Dev, 35: 729-748 |
|
GSE158083 |
| Ito, Keitaro et al. (2024) Histological effects of combined therapy involving scar resection, decellularized scaffolds, and human iPSC-NS/PCs transplantation in chronic complete spinal cord injury.; Sci Rep, 14: 31500 |
|
GSE278491 |
| Ito, Kenji et al. (2016) Identification of genes associated with the astrocyte-specific gene Gfap during astrocyte differentiation.; Sci Rep, 6: 23903 |
|
GSE134208 |
| Ito, Makiko et al. (2026) Paternal Exposure to the Neonicotinoid Pesticide Clothianidin Alters Sperm MicroRNA Profiles in Mice and Intergenerationally Reduces Locomotor Activity in Male Offspring.; J Appl Toxicol, [no vol.]: [no pages] |
|
GSE281282 |
| Ito, Masaki et al. (2018) RNA-Sequencing Analysis Revealed a Distinct Motor Cortex Transcriptome in Spontaneously Recovered Mice After Stroke.; Stroke, 49: 2191-2199 |
|
GSE142152 |
| Ito, Masatoshi et al. (2023) Inositol pyrophosphate profiling reveals regulatory roles of IP6K2-dependent enhanced IP7metabolism in the enteric nervous system.; J Biol Chem, 299: 102928 |
|
GSE189239 |
| Ito, Minako et al. (2019) Brain regulatory T cells suppress astrogliosis and potentiate neurological recovery.; Nature, 565: 246-250 |
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GSE109259 |
| Ito, Naoki et al. (2022) Preventive effect of a Kampo medicine, kososan, on recurrent depression in a mouse model of repeated social defeat stress.; Gene, 806: 145920 |
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GSE179968 |
| Ito, Satomi et al. (2014) Loss of neuronal 3D chromatin organization causes transcriptional and behavioural deficits related to serotonergic dysfunction.; Nat Commun, 5: 4450 |
|
GSE48437 |
| Ito, Takashi et al. (2023) Brazilian green propolis prevent Alzheimer's disease-like cognitive impairment induced by amyloid beta in mice.; BMC Complement Med Ther, 23: 416 |
|
GSE234109 |
| Ito, Tomonobu et al. (2012) Stem cell factor programs the mast cell activation phenotype.; J Immunol, [no vol.]: [no pages] |
|
GSE35332 |
| Itoh, Noriko et al. (2018) Cell-specific and region-specific transcriptomics in the multiple sclerosis model: Focus on astrocytes.; Proc Natl Acad Sci U S A, 115: E302-E309 |
|
GSE100297 |
| Itoh, Noriko et al. (2023) Estrogen receptor beta in astrocytes modulates cognitive function in mid-age female mice.; Nat Commun, 14: 6044 |
|
GSE220288 |
| Itoh, Noriko et al. (2023) Sex differences in the neuronal transcriptome and synaptic mitochondrial function in the cerebral cortex of a multiple sclerosis model.; Front Neurol, 14: 1268411 |
|
GSE239455 |
| Itoh, Yuichiro et al. (2025) Deletion of the X-chromosomal geneKdm6ain microglia of female mice ameliorates neuroinflammation and restores translatome profiles.; Sci Transl Med, 17: eadq3401 |
|
GSE221400 GSE261726 GSE246008 GSE220566 |
| Itoh-Nakadai, Ari et al. (2014) The transcription repressors Bach2 and Bach1 promote B cell development by repressing the myeloid program.; Nat Immunol, 15: 1171-80 |
|
GSE61409.1 GSE61409.2 GSE61409.3 |
| Itoi, Keiichi et al. (2019) Genome-Wide Analysis of Glucocorticoid-Responsive Transcripts in the Hypothalamic Paraventricular Region of Male Rats.; Endocrinology, 160: 38-54 |
|
GSE120002 |
| Itsuno, Maika et al. (2025) MAPT-A152T mutation drives neuronal hyperactivity through Fyn-NMDAR signaling in human iPSC-Derived neurons: Insights into Alzheimer's pathogenesis.; Regen Ther, 28: 201-213 |
|
GSE225864 |
| Ivanov, Andranik et al. (2022) Analyses of circRNA Expression throughout the Light-Dark Cycle Reveal a Strong Regulation ofCdr1as, Associated with Light Entrainment in the SCN.; Int J Mol Sci, 23: [no pages] |
|
GSE200314 |
| Ivanova, Natalia et al. (2006) Dissecting self-renewal in stem cells with RNA interference.; Nature, 442: 533-8 |
|
GSE4679 |
| Ivanyuk, Dina et al. (2015) Ascorbic Acid-Induced Cardiac Differentiation of Murine Pluripotent Stem Cells: Transcriptional Profiling and Effect of a Small Molecule Synergist of Wnt/?-Catenin Signaling Pathway.; Cell Physiol Biochem, 36: 810-30 |
|
GSE54242 |
| Ivashko-Pachima, Yanina et al. (2019) Discovery of autism/intellectual disability somatic mutations in Alzheimer's brains: mutated ADNP cytoskeletal impairments and repair as a case study.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE113524 |
| Ivask, Marilin et al. (2018) Hippocampus and Hypothalamus RNA-sequencing of WFS1-deficient Mice.; Neuroscience, 374: 91-103 |
|
GSE102624 |
| Iverson, Sonya V et al. (2013) A Txnrd1-dependent metabolic switch alters hepatic lipogenesis, glycogen storage, and detoxification.; Free Radic Biol Med, [no vol.]: [no pages] |
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GSE37874 |
| Ivshina, Maria P et al. (2022) CPEB1 regulates the inflammatory immune response, phagocytosis, and alternative polyadenylation in microglia.; Glia, 70: 1850-1863 |
|
GSE195513 |
| Iwafuchi-Doi, Makiko et al. (2012) Transcriptional regulatory networks in epiblast cells and during anterior neural plate development as modeled in epiblast stem cells.; Development, 139: 3926-37 |
|
GSE38085 |
| Iwai-Takekoshi, Lena et al. (2018) Activation of Wnt signaling reduces ipsilaterally projecting retinal ganglion cells in pigmented retina.; Development, 145: [no pages] |
|
GSE121467 |
| Iwakawa, Mayumi et al. (2007) The radiation-induced cell-death signaling pathway is activated by concurrent use of cisplatin in sequential biopsy specimens from patients with cervical cancer.; Cancer Biol Ther, 6: 905-11 |
|
GSE3578 |
| Iwakawa, Mayumi et al. (2008) Expression profiles are different in carbon ion-irradiated normal human fibroblasts and their bystander cells.; Mutat Res, 642: 57-67 |
|
GSE8993 |
| Iwamoto, Fumiko et al. (2008) Transcription-dependent nucleolar cap localization and possible nuclear function of DExH RNA helicase RHAU.; Exp Cell Res, 314: 1378-91 |
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GSE8192 |
| Iwamoto, K et al. (2004) Molecular characterization of bipolar disorder by comparing gene expression profiles of postmortem brains of major mental disorders.; Mol Psychiatry, 9: 406-16 |
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GSE12654 |
| Iwamoto, Kazuya et al. (2005) Altered expression of mitochondria-related genes in postmortem brains of patients with bipolar disorder or schizophrenia, as revealed by large-scale DNA microarray analysis.; Hum Mol Genet, 14: 241-53 |
|
GSE12649 |
| Iwamoto, Takayuki et al. (2011) Different gene expressions are associated with the different molecular subtypes of inflammatory breast cancer.; Breast Cancer Res Treat, 125: 785-95 |
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GSE22597 |
| Iwamoto, Takayuki et al. (2011) Gene pathways associated with prognosis and chemotherapy sensitivity in molecular subtypes of breast cancer.; J Natl Cancer Inst, 103: 264-72 |
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GSE23988 GSE22093 |
| Iwamoto, Takayuki et al. (2017) Immunohistochemical Ki67 after short-term hormone therapy identifies low-risk breast cancers as reliably as genomic markers.; Oncotarget, 8: 26122-26128 |
|
GSE80077 |
| Iwanaga, Ritsuko et al. (2024) Tumor-Intrinsic Activity of Chromobox 2 Remodels the Tumor Microenvironment in High-grade Serous Carcinoma.; Cancer Res Commun, 4: 1919-1932 |
|
GSE251945 GSE251946 GSE251944 |
| Iwao, Yukie et al. (2021) eIF4B enhances ATF4 expression and contributes to cellular adaptation to asparagine limitation in BRAF-mutated A375 melanoma.; Biochem Biophys Res Commun, 573: 93-99 |
|
GSE179452 |
| Iwasaki, Masayuki et al. (2015) CD93 Marks a Non-Quiescent Human Leukemia Stem Cell Population and Is Required for Development of MLL-Rearranged Acute Myeloid Leukemia.; Cell Stem Cell, 17: 412-21 |
|
GSE64773 |
| Iwase, Shigeki et al. (2016) A Mouse Model of X-linked Intellectual Disability Associated with Impaired Removal of Histone Methylation.; Cell Rep, 14: 1000-1009 |
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GSE74630 GSE61024 |
| Iwata, Jun-ichi et al. (2012) Fibroblast growth factor 9 (FGF9)-pituitary homeobox 2 (PITX2) pathway mediates transforming growth factor ? (TGF?) signaling to regulate cell proliferation in palatal mesenchyme during mouse palatogenesis.; J Biol Chem, 287: 2353-63 |
|
GSE22989 |
| Iwata, Kengo et al. (2020) Sugarcane (Saccharum officinarumL.) Top Extract Ameliorates Cognitive Decline in Senescence Model SAMP8 Mice: Modulation of Neural Development and Energy Metabolism.; Front Cell Dev Biol, 8: 573487 |
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GSE151727 |
| Iwata, Shin-ichi et al. (2006) Classification of antipsychotic drugs by gene expression in the frontal cortex of mice.; Nihon Shinkei Seishin Yakurigaku Zasshi, 26: 107-9 |
|
GSE1501 |
| Iwata-Yoshikawa, Naoko et al. (2014) Effects of Toll-like receptor stimulation on eosinophilic infiltration in lungs of BALB/c mice immunized with UV-inactivated severe acute respiratory syndrome-related coronavirus vaccine.; J Virol, 88: 8597-614 |
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GSE50855 GSE44274 |
| Iweka, Chinyere Agbaegbu et al. (2023) Myeloid deficiency of the intrinsic clock protein BMAL1 accelerates cognitive aging by disrupting microglial synaptic pruning.; J Neuroinflammation, 20: 48 |
|
GSE214514 |
| Iyer, Abhirami K et al. (2023) Targeted ASO-mediated Atp1a2 knockdown in astrocytes reduces SOD1 aggregation and accelerates disease onset in mutant SOD1 mice.; PLoS One, 18: e0294731 |
|
GSE196843 |
| Iyer, V R et al. (1999) The transcriptional program in the response of human fibroblasts to serum.; Science, 283: 83-7 |
|
GSE58 GSE56 |
| Izraely, Sivan et al. (2012) The metastatic microenvironment: brain-residing melanoma metastasis and dormant micrometastasis.; Int J Cancer, 131: 1071-82 |
|
GSE27980 |
| Izzy, Saef et al. (2025) Nasal anti-CD3 monoclonal antibody ameliorates traumatic brain injury, enhances microglial phagocytosis and reduces neuroinflammation via IL-10-dependent Treg-microglia crosstalk.; Nat Neurosci, 28: 499-516 |
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GSE276739 GSE276646 GSE276649 |
| Jabbari, Ali et al. (2014) Dominant Th1 and minimal Th17 skewing in discoid lupus revealed by transcriptomic comparison with psoriasis.; J Invest Dermatol, 134: 87-95 |
|
GSE52471 |
| Jaber, Sara et al. (2025) Oncogenic and teratogenic effects ofTrp53Y217C, an inflammation-prone mouse model of the human hotspot mutantTP53Y220C.; Elife, 13: [no pages] |
|
GSE248936 |
| Jablonowski, Carolyn M et al. (2024) Metabolic reprogramming of cancer cells by JMJD6-mediated pre-mRNA splicing associated with therapeutic response to splicing inhibitor.; Elife, 12: [no pages] |
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GSE248283 GSE185867 |
| Jachim, Sarah K et al. (2023) BMAL1 modulates senescence programming via AP-1.; Aging (Albany NY), 15: 9984-10009 |
|
GSE229011 |
| Jack, Graham D et al. (2006) Long term metabolic arrest and recovery of HEK293 spheroids involves NF-kappaB signaling and sustained JNK activation.; J Cell Physiol, 206: 526-36 |
|
GSE1364 |
| Jackson, A Francina et al. (2013) Preparation of archival formalin-fixed paraffin-embedded mouse liver samples for use with the Agilent gene expression microarray platform.; J Pharmacol Toxicol Methods, 68: 260-8 |
|
GSE40990 |
| Jackson, Abigail C et al. (2020) Identification of novel activators of the metal responsive transcription factor (MTF-1) using a gene expression biomarker in a microarray compendium.; Metallomics, 12: 1400-1415 |
|
GSE152703 |
| Jackson, Anna Francina et al. (2014) Case study on the utility of hepatic global gene expression profiling in the risk assessment of the carcinogen furan.; Toxicol Appl Pharmacol, 274: 63-77 |
|
GSE48644 |
| Jackson, Devine et al. (2022) Th1 cytokines synergize to change gene expression and promote corticosteroid insensitivity in pediatric airway smooth muscle.; Respir Res, 23: 126 |
|
GSE179354 |
| Jackson, Petra et al. (2012) Exposure of pregnant mice to carbon black by intratracheal instillation: toxicogenomic effects in dams and offspring.; Mutat Res, 745: 73-83 |
|
GSE29761 |
| Jackson, Steven A et al. (2016) Alternative Routes to Induced Pluripotent Stem Cells Revealed by Reprogramming of the Neural Lineage.; Stem Cell Reports, 6: 302-11 |
|
GSE76130 |
| Jackson, Thomas W et al. (2022) Adrenal Stress Hormone Regulation of Hepatic Homeostatic Function After an Acute Ozone Exposure in Wistar-Kyoto Male Rats.; Toxicol Sci, 189: 73-90 |
|
GSE196818 |
| Jackson, Thomas W et al. (2023) Multi-tissue transcriptomic and serum metabolomic assessment reveals systemic implications of acute ozone-induced stress response in male Wistar Kyoto rats.; Metabolomics, 19: 81 |
|
GSE234042 |
| Jackson, Travis C et al. (2017) Whole-transcriptome microarray analysis reveals regulation of Rab4 by RBM5 in neurons.; Neuroscience, 361: 93-107 |
|
GSE98858 |
| Jackson, Travis C et al. (2020) Identification of Novel Targets of RBM5 in the Healthy and Injured Brain.; Neuroscience, 440: 299-315 |
|
GSE128543 |
| Jackson-Weaver, Olan et al. (2020) PRMT1-p53 Pathway Controls Epicardial EMT and Invasion.; Cell Rep, 31: 107739 |
|
GSE122200 |
| Jacob Berger, Adi et al. (2021) IRS1 phosphorylation underlies the non-stochastic probability of cancer cells to persist during EGFR inhibition therapy.; Nat Cancer, 2: 1055-1070 |
|
GSE178977 |