List of all 21,933 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Kotliarova, Svetlana et al. (2008) Glycogen synthase kinase-3 inhibition induces glioma cell death through c-MYC, nuclear factor-kappaB, and glucose regulation.; Cancer Res, 68: 6643-51 |
|
GSE11285 |
| Kottakis, Filippos et al. (2016) LKB1 loss links serine metabolism to DNA methylation and tumorigenesis.; Nature, 539: 390-395 |
|
GSE86144 |
| Kotz, Kenneth T et al. (2010) Clinical microfluidics for neutrophil genomics and proteomics.; Nat Med, 16: 1042-7 |
|
GSE22103 |
| Koulmanda, Maria et al. (2012) The role of TNF-? in mice with type 1- and 2- diabetes.; PLoS One, 7: e33254 |
|
GSE33891 |
| Kouokam, Joseph Calvin et al. (2011) Investigation of griffithsin's interactions with human cells confirms its outstanding safety and efficacy profile as a microbicide candidate.; PLoS One, 6: e22635 |
|
GSE28584 |
| Koupourtidou, Christina et al. (2024) Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex.; Nat Commun, 15: 2866 |
|
GSE226207 |
| Kouroupi, Georgia et al. (2017) Defective synaptic connectivity and axonal neuropathology in a human iPSC-based model of familial Parkinson's disease.; Proc Natl Acad Sci U S A, 114: E3679-E3688 |
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GSE84684 |
| Koury, Jeffrey et al. (2025) EphB2-mediated ephrin-B reverse signaling on microglia drives an anti-viral, but inflammatory and neurotoxic response associated with HIV.; J Neuroinflammation, 22: 171 |
|
GSE260757 |
| Koutsodendris, Nicole et al. (2023) APOE4-promoted gliosis and degeneration in tauopathy are ameliorated by pharmacological inhibition of HMGB1 release.; Cell Rep, 42: 113252 |
|
GSE242153 |
| Koutsodendris, Nicole et al. (2023) Neuronal APOE4 removal protects against tau-mediated gliosis, neurodegeneration and myelin deficits.; Nat Aging, 3: 275-296 |
|
GSE221215 |
| Kouwenhoven, Evelyn N et al. (2015) Transcription factor p63 bookmarks and regulates dynamic enhancers during epidermal differentiation.; EMBO Rep, 16: 863-78 |
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GSE59827 |
| Kouwenhoven, Willemieke M et al. (2021) Nkx2.9Contributes to Mid-Hindbrain Patterning by Regulation of mdDA Neuronal Cell-Fate and Repression of a Hindbrain-Specific Cell-Fate.; Int J Mol Sci, 22: [no pages] |
|
GSE185584 |
| Kovalenko, Marina et al. (2020) Histone deacetylase knockouts modify transcription, CAG instability and nuclear pathology in Huntington disease mice.; Elife, 9: [no pages] |
|
GSE148440 |
| Kovalenko, Pavlo L et al. (2010) 1,25 dihydroxyvitamin D-mediated orchestration of anticancer, transcript-level effects in the immortalized, non-transformed prostate epithelial cell line, RWPE1.; BMC Genomics, 11: 26 |
|
GSE15947 |
| Kovlyagina, Irina et al. (2024) Leveraging interindividual variability in threat conditioning of inbred mice to model trait anxiety.; PLoS Biol, 22: e3002642 |
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GSE223269 |
| Kowalchuk, Angelica M et al. (2018) Requirements for Neurogenin2 during mouse postnatal retinal neurogenesis.; Dev Biol, 442: 220-235 |
|
GSE103457 |
| Koyanagi-Aoi, Michiyo et al. (2013) Differentiation-defective phenotypes revealed by large-scale analyses of human pluripotent stem cells.; Proc Natl Acad Sci U S A, 110: 20569-74 |
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GSE42452 GSE42445 |
| Koyavski, Lee et al. (2019) Sex-Dependent Sensory Phenotypes and Related Transcriptomic Expression Profiles Are Differentially Affected by Angelman Syndrome.; Mol Neurobiol, 56: 5998-6016 |
|
GSE130883 |
| Kozai, Keisuke et al. (2023) The AKT1-FOXO4 axis reciprocally regulates hemochorial placentation.; Development, 150: [no pages] |
|
GSE205828 GSE205829 |
| Kozaki, Ryohei et al. (2023) Investigation of the anti-tumor mechanism of tirabrutinib, a highly selective Bruton's tyrosine kinase inhibitor, by phosphoproteomics and transcriptomics.; PLoS One, 18: e0282166 |
|
GSE210284 |
| Kozell, Laura B et al. (2020) RNA-Seq Analysis of Genetic and Transcriptome Network Effects of Dual-Trait Selection for Ethanol Preference and Withdrawal Using SOT and NOT Genetic Models.; Alcohol Clin Exp Res, 44: 820-830 |
|
GSE140567 |
| Koziel, Joanna et al. (2009) Phagocytosis of Staphylococcus aureus by macrophages exerts cytoprotective effects manifested by the upregulation of antiapoptotic factors.; PLoS One, 4: e5210 |
|
GSE13670 |
| Kozlenkov, Alexey et al. (2024) Novel method of isolating nuclei of human oligodendrocyte precursor cells reveals substantial developmental changes in gene expression and H3K27ac histone modification.; Glia, 72: 69-89 |
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GSE239662 |
| Kozlova, Alena et al. (2021) Sex-specific nicotine sensitization and imprinting of self-administration in rats inform GWAS findings on human addiction phenotypes.; Neuropsychopharmacology, 46: 1746-1756 |
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GSE157683 GSE157726 |
| Kozlova, Alena et al. (2022) Loss of function of OTUD7A in the schizophrenia- associated 15q13.3 deletion impairs synapse development and function in human neurons.; Am J Hum Genet, 109: 1500-1519 |
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GSE189614 |
| Kozuka, Chisayo et al. (2017) Marked augmentation of PLGA nanoparticle-induced metabolically beneficial impact of γ-oryzanol on fuel dyshomeostasis in genetically obese-diabetic ob/ob mice.; Drug Deliv, 24: 558-568 |
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GSE86858 |
| Kozul, Courtney D et al. (2008) Laboratory diet profoundly alters gene expression and confounds genomic analysis in mouse liver and lung.; Chem Biol Interact, 173: 129-40 |
|
GSE9630.2 |
| Kozul, Courtney D et al. (2009) Chronic exposure to arsenic in the drinking water alters the expression of immune response genes in mouse lung.; Environ Health Perspect, 117: 1108-15 |
|
GSE11056.1 GSE11056.2 |
| Kozulin, Peter et al. (2009) Differential expression of anti-angiogenic factors and guidance genes in the developing macula.; Mol Vis, 15: 45-59 |
|
GSE12621 |
| Kozłowska, Emilia et al. (2025) HTT loss-of-function contributes to RNA deregulation in developing Huntington's disease neurons.; Cell Biosci, 15: 100 |
|
GSE270472 |
| Krach, Florian et al. (2018) Transcriptome-pathology correlation identifies interplay between TDP-43 and the expression of its kinase CK1E in sporadic ALS.; Acta Neuropathol, 136: 405-423 |
|
GSE76220 |
| Kracikova, M et al. (2013) A threshold mechanism mediates p53 cell fate decision between growth arrest and apoptosis.; Cell Death Differ, 20: 576-88 |
|
GSE30753 |
| Kraemer, Benjamin R et al. (2026) Increased susceptibility to 4-HNE-induced toxicity and impaired development in a model of ALDH4A1-deficient pediatric epilepsy carrying the S352L variant.; Commun Biol, 9: [no pages] |
|
GSE314834 |
| Kraft, Anna et al. (2017) Astrocytic Calcium Waves Signal Brain Injury to Neural Stem and Progenitor Cells.; Stem Cell Reports, 8: 701-714 |
|
GSE93376 |
| Kraft, Michael et al. (2011) Disruption of the histone acetyltransferase MYST4 leads to a Noonan syndrome-like phenotype and hyperactivated MAPK signaling in humans and mice.; J Clin Invest, 121: 3479-91 |
|
GSE22969 |
| Kragh, Christine L et al. (2014) Prodegenerative I?B? expression in oligodendroglial ?-synuclein models of multiple system atrophy.; Neurobiol Dis, 63: 171-83 |
|
GSE51781 |
| Kramer, Nicholas J et al. (2016) Spt4 selectively regulates the expression of C9orf72 sense and antisense mutant transcripts.; Science, 353: 708-12 |
|
GSE83484 |
| Kramer, Nicholas J et al. (2018) CRISPR-Cas9 screens in human cells and primary neurons identify modifiers of C9ORF72 dipeptide-repeat-protein toxicity.; Nat Genet, 50: 603-612 |
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GSE109177.1 GSE109177.2 |
| Krammer, Teresa et al. (2024) Mouse neural tube organoids self-organize floorplate through BMP-mediated cluster competition.; Dev Cell, 59: 1940-1953.e10 |
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GSE260579 GSE236543 GSE221187 |
| Krasemann, Susanne et al. (2017) The TREM2-APOE Pathway Drives the Transcriptional Phenotype of Dysfunctional Microglia in Neurodegenerative Diseases.; Immunity, 47: 566-581.e9 |
|
GSE102564 GSE102562 GSE102563 |
| Krasnova, Irina N et al. (2013) CREB phosphorylation regulates striatal transcriptional responses in the self-administration model of methamphetamine addiction in the rat.; Neurobiol Dis, 58: 132-43 |
|
GSE38223 |
| Krasnova, Irina N et al. (2017) Compulsive methamphetamine taking in the presence of punishment is associated with increased oxytocin expression in the nucleus accumbens of rats.; Sci Rep, 7: 8331 |
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GSE95569 GSE95570 |
| Kratzer, Ingrid et al. (2013) Developmental changes in the transcriptome of the rat choroid plexus in relation to neuroprotection.; Fluids Barriers CNS, 10: 25 |
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GSE44056 |
| Krause, William C et al. (2021) Oestrogen engages brain MC4R signalling to drive physical activity in female mice.; Nature, 599: 131-135 |
|
GSE181204 |
| Kraushar, Matthew L et al. (2014) Temporally defined neocortical translation and polysome assembly are determined by the RNA-binding protein Hu antigen R.; Proc Natl Acad Sci U S A, 111: E3815-24 |
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GSE50809 |
| Kraushar, Matthew L et al. (2021) Protein Synthesis in the Developing Neocortex at Near-Atomic Resolution Reveals Ebp1-Mediated Neuronal Proteostasis at the 60S Tunnel Exit.; Mol Cell, 81: 304-322.e16 |
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GSE157423 GSE136199 |
| Krauskopf, Julian et al. (2022) Transcriptomics analysis of human iPSC-derived dopaminergic neurons reveals a novel model for sporadic Parkinson's disease.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE196190 |
| Krauskopf, Julian et al. (2024) Molecular insights into PCB neurotoxicity: Comparing transcriptomic responses across dopaminergic neurons, population blood cells, and Parkinson's disease pathology.; Environ Int, 186: 108642 |
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GSE253569 |
| Kravchick, Dana O et al. (2016) Synaptonuclear messenger PRR7 inhibits c-Jun ubiquitination and regulates NMDA-mediated excitotoxicity.; EMBO J, 35: 1923-34 |
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GSE62686 |
| Kravitz, Carolyn J et al. (2026) Tumor Cell Clustering Enhances Metastatic Competence by Regulating the H3K36 Histone Demethylase KDM2A.; bioRxiv, [no vol.]: [no pages] |
|
GSE316477 |
| Kravtsova-Ivantsiv, Yelena et al. (2015) KPC1-mediated ubiquitination and proteasomal processing of NF-?B1 p105 to p50 restricts tumor growth.; Cell, 161: 333-47 |
|
GSE60530 |
| Krawczyk, Mitchell C et al. (2022) Human Astrocytes Exhibit Tumor Microenvironment-, Age-, and Sex-Related Transcriptomic Signatures.; J Neurosci, 42: 1587-1603 |
|
GSE168375 |
| Krawczyk, Mitchell C et al. (2023) Lymphocyte deficiency alters the transcriptomes of oligodendrocytes, but not astrocytes or microglia.; PLoS One, 18: e0279736 |
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GSE210580 |
| Krebs, Catharine E et al. (2020) Whole blood transcriptome analysis in bipolar disorder reveals strong lithium effect.; Psychol Med, 50: 2575-2586 |
|
GSE124326 |
| Krebs, Christopher J et al. (2009) Regulator of sex-limitation KRAB zinc finger proteins modulate sex-dependent and -independent liver metabolism.; Physiol Genomics, 38: 16-28 |
|
GSE12712 |
| Krebs, Joerg et al. (2014) Open lung approach with low tidal volume mechanical ventilation attenuates lung injury in rats with massive brain damage.; Crit Care, 18: R59 |
|
GSE52142 |
| Kreepala, C et al. (2013) Comparing molecular assessment of implantation biopsies with histologic and demographic risk assessment.; Am J Transplant, 13: 415-26 |
|
GSE37838 |
| Kregel, Steven et al. (2016) Acquired resistance to the second-generation androgen receptor antagonist enzalutamide in castration-resistant prostate cancer.; Oncotarget, 7: 26259-74 |
|
GSE78201 |
| Kreiner, G et al. (2013) A neuroprotective phase precedes striatal degeneration upon nucleolar stress.; Cell Death Differ, 20: 1455-64 |
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GSE29647 |
| Kreit, Marguerite et al. (2014) Inefficient type I interferon-mediated antiviral protection of primary mouse neurons is associated with the lack of apolipoprotein l9 expression.; J Virol, 88: 3874-84 |
|
GSE53951 |
| Krejci, Ondrej et al. (2008) p53 signaling in response to increased DNA damage sensitizes AML1-ETO cells to stress-induced death.; Blood, 111: 2190-9 |
|
GSE8023 |
| Krementsov, Dimitry N et al. (2013) Histamine H(3) receptor integrates peripheral inflammatory signals in the neurogenic control of immune responses and autoimmune disease susceptibility.; PLoS One, 8: e62743 |
|
GSE44873 |
| Krementsov, Dimitry N et al. (2014) Sex-specific control of central nervous system autoimmunity by p38 mitogen-activated protein kinase signaling in myeloid cells.; Ann Neurol, 75: 50-66 |
|
GSE51707 |
| Krementsov, Dimitry N et al. (2018) Sex-Specific Gene-by-Vitamin D Interactions Regulate Susceptibility to Central Nervous System Autoimmunity.; Front Immunol, 9: 1622 |
|
GSE116457 |
| Kremer, Anita N et al. (2012) Endogenous HLA class II epitopes that are immunogenic in vivo show distinct behavior toward HLA-DM and its natural inhibitor HLA-DO.; Blood, 120: 3246-55 |
|
GSE38798 |
| Kremer, Bas et al. (2012) Temporal colonic gene expression profiling in the recurrent colitis model identifies early and chronic inflammatory processes.; PLoS One, 7: e50388 |
|
GSE35609 |
| Kremp, Marco et al. (2024) Transcription factor Olig2 is a major downstream effector of histone demethylase Phf8 during oligodendroglial development.; Glia, 72: 1435-1450 |
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GSE253878 GSE253877 |
| Kremsky, Isaac et al. (2023) Fetal hypoxia results in sex- and cell type-specific alterations in neonatal transcription in rat oligodendrocyte precursor cells, microglia, neurons, and oligodendrocytes.; Cell Biosci, 13: 58 |
|
GSE216946 |
| Krencik, Robert et al. (2015) Dysregulation of astrocyte extracellular signaling in Costello syndrome.; Sci Transl Med, 7: 286ra66 |
|
GSE64194 |
| Krenn, Veronica et al. (2021) Organoid modeling of Zika and herpes simplex virus 1 infections reveals virus-specific responses leading to microcephaly.; Cell Stem Cell, 28: 1362-1379.e7 |
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GSE123816 GSE145496 |
| Krenz, Bastian et al. (2021) MYC- and MIZ1-Dependent Vesicular Transport of Double-Strand RNA Controls Immune Evasion in Pancreatic Ductal Adenocarcinoma.; Cancer Res, 81: 4242-4256 |
|
GSE154903.2 |
| Kress, Andrea K et al. (2010) Elevated cyclic AMP levels in T lymphocytes transformed by human T-cell lymphotropic virus type 1.; J Virol, 84: 8732-42 |
|
GSE17718 |
| Kress, Theresia R et al. (2016) Identification of MYC-Dependent Transcriptional Programs in Oncogene-Addicted Liver Tumors.; Cancer Res, 76: 3463-72 |
|
GSE76062 |
| Kresse, Stine H et al. (2012) Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma.; PLoS One, 7: e48262 |
|
GSE36001 |
| Kretschmer, Céline et al. (2011) Identification of early molecular markers for breast cancer.; Mol Cancer, 10: 15 |
|
GSE21444 |
| Kretschmer, Viola et al. (2023) Deletion of IFT20 exclusively in the RPE ablates primary cilia and leads to retinal degeneration.; PLoS Biol, 21: e3002402 |
|
GSE144724 |
| Kretz, Perrine F et al. (2023) Dissecting the autism-associated 16p11.2 locus identifies multiple drivers in neuroanatomical phenotypes and unveils a male-specific role for the major vault protein.; Genome Biol, 24: 261 |
|
GSE243261 |
| Kriachkov, Viacheslav et al. (2023) Arginine-rich C9ORF72 ALS proteins stall ribosomes in a manner distinct from a canonical ribosome-associated quality control substrate.; J Biol Chem, 299: 102774 |
|
GSE193962 |
| Kridsada, Kim et al. (2018) Roof Plate-Derived Radial Glial-like Cells Support Developmental Growth of Rapidly Adapting Mechanoreceptor Ascending Axons.; Cell Rep, 23: 2928-2941 |
|
GSE114193 |
| Kriegel, Martin A et al. (2011) Naturally transmitted segmented filamentous bacteria segregate with diabetes protection in nonobese diabetic mice.; Proc Natl Acad Sci U S A, 108: 11548-53 |
|
GSE29806 |
| Kriks, Sonja et al. (2011) Dopamine neurons derived from human ES cells efficiently engraft in animal models of Parkinson's disease.; Nature, 480: 547-51 |
|
GSE32658 |
| Krishna, Venkatramana D et al. (2023) Impact of age and sex on neuroinflammation following SARS-CoV-2 infection in a murine model.; bioRxiv, [no vol.]: [no pages] |
|
GSE237092 |
| Krishna, Vinod et al. (2021) Integration of the Transcriptome and Genome-Wide Landscape of BRD2 and BRD4 Binding Motifs Identifies Key Superenhancer Genes and Reveals the Mechanism of Bet Inhibitor Action in Rheumatoid Arthritis Synovial Fibroblasts.; J Immunol, 206: 422-431 |
|
GSE148395 |
| Krishnamoorthy, Aparna et al. (2011) Fibrinogen ?-derived B?(15-42) peptide protects against kidney ischemia/reperfusion injury.; Blood, 118: 1934-42 |
|
GSE27274 |
| Krishnamoorthy, Gnana P et al. (2019) EIF1AXandRASMutations Cooperate to Drive Thyroid Tumorigenesis through ATF4 and c-MYC.; Cancer Discov, 9: 264-281 |
|
GSE113695 |
| Krishnamoorthy, Sriram et al. (2017) Dimethyl fumarate increases fetal hemoglobin, provides heme detoxification, and corrects anemia in sickle cell disease.; JCI Insight, 2: [no pages] |
|
GSE105035 |
| Krishnan, Harish R et al. (2022) Unraveling the epigenomic and transcriptomic interplay during alcohol-induced anxiolysis.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE171400 |