Uses of Class
ubic.gemma.core.analysis.preprocess.filter.FilterConfig
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Uses of FilterConfig in ubic.gemma.core.analysis.expression.coexpression.links
Methods in ubic.gemma.core.analysis.expression.coexpression.links with parameters of type FilterConfig Modifier and Type Method Description LinkAnalysis
LinkAnalysisService. process(ExpressionExperiment ee, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
Run a link analysis on an experiment, and persist the results if the configuration says to.LinkAnalysis
LinkAnalysisServiceImpl. process(ExpressionExperiment ee, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
LinkAnalysis
LinkAnalysisService. processVectors(Taxon t, Collection<ProcessedExpressionDataVector> dataVectors, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
Used when the input is data vectors from another source, instead of from a DB-bound expressionExperiment.LinkAnalysis
LinkAnalysisServiceImpl. processVectors(Taxon t, Collection<ProcessedExpressionDataVector> dataVectors, FilterConfig filterConfig, LinkAnalysisConfig linkAnalysisConfig)
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Uses of FilterConfig in ubic.gemma.core.analysis.preprocess.filter
Constructors in ubic.gemma.core.analysis.preprocess.filter with parameters of type FilterConfig Constructor Description ExpressionExperimentFilter(Collection<ArrayDesign> arrayDesignsUsed, FilterConfig config)
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Uses of FilterConfig in ubic.gemma.core.analysis.service
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Uses of FilterConfig in ubic.gemma.core.tasks.analysis.coexp
Methods in ubic.gemma.core.tasks.analysis.coexp that return FilterConfig Modifier and Type Method Description FilterConfig
LinkAnalysisTaskCommand. getFilterConfig()
Constructors in ubic.gemma.core.tasks.analysis.coexp with parameters of type FilterConfig Constructor Description LinkAnalysisTaskCommand(ExpressionExperiment ee, LinkAnalysisConfig lac, FilterConfig fg)
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