Uses of Package
ubic.gemma.core.analysis.preprocess
Packages that use ubic.gemma.core.analysis.preprocess
Package
Description
This package contains classes for preprocessing expression data.
This package contains interfaces and classes for loading expression data.
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Classes in ubic.gemma.core.analysis.preprocess used by ubic.gemma.core.analysis.preprocessClassDescriptionResponsible for returning the coordinates of the experiment's Mean-Variance relationship.Container for details about a proposed outlier.Allows us to catch preprocessing errors and handle them correctly.Co-bean carrying the
processFor*diagnostic steps thatPreprocessorServiceImpl.processDiagnostics(ExpressionExperiment)runs as part of the post-load preprocessing pipeline.Encapsulates steps that are done to expression data sets after they are loaded and experimental design curated.Exception raised in preprocessing when there is a problem with sample coexpression analysis.TODO Document MeException raised if a SVD cannot be computed.Deprecated.Two-colour arrays are no longer supported for new data; kept so existing two-colour datasets still load and reprocess. -
Classes in ubic.gemma.core.analysis.preprocess used by ubic.gemma.core.analysis.preprocess.batcheffectsClassDescriptionAllows us to catch preprocessing errors and handle them correctly.
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Classes in ubic.gemma.core.analysis.preprocess used by ubic.gemma.core.loader.expressionClassDescriptionAllows us to catch preprocessing errors and handle them correctly.
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Classes in ubic.gemma.core.analysis.preprocess used by ubic.gemma.rest.util.args