Package ubic.gemma.core.analysis.sequence

Interface ArrayDesignMapResultService

All Known Implementing Classes:

ArrayDesignMapResultServiceImpl

public interface ArrayDesignMapResultService

Method Summary

Modifier and Type	Method	Description
Collection<CompositeSequenceMapValueObject>	getSummaryMapValueObjects(Collection<Object[]> sequenceData)	FIXME this is only public so we can use it in the DesignElementController; need refactoring (see CompositeSequenceService) Function to get a collection of CompositeSequenceMapValueObjects that contain information about a composite sequence and related tables.
Collection<CompositeSequenceMapValueObject>	getSummaryMapValueObjects(ArrayDesign arrayDesign)
Collection<CompositeSequenceMapSummary>	summarizeMapResults(Collection<CompositeSequence> compositeSequences)	Non-HQL version of the composite sequence data summary query.
Collection<CompositeSequenceMapSummary>	summarizeMapResults(ArrayDesign arrayDesign)

Method Details

summarizeMapResults

Collection<CompositeSequenceMapSummary> summarizeMapResults(ArrayDesign arrayDesign)

getSummaryMapValueObjects

Collection<CompositeSequenceMapValueObject> getSummaryMapValueObjects(ArrayDesign arrayDesign)

getSummaryMapValueObjects

Collection<CompositeSequenceMapValueObject> getSummaryMapValueObjects(Collection<Object[]> sequenceData)

FIXME this is only public so we can use it in the DesignElementController; need refactoring (see CompositeSequenceService) Function to get a collection of CompositeSequenceMapValueObjects that contain information about a composite sequence and related tables.

Parameters:

sequenceData - sequence data

Returns:

composite sequence VOS

summarizeMapResults

Collection<CompositeSequenceMapSummary> summarizeMapResults(Collection<CompositeSequence> compositeSequences)

Non-HQL version of the composite sequence data summary query. Returns a summary of the composite sequence data and related tables.

Parameters:

compositeSequences - composite sequences

Returns:

composite sequence map summaries