Package ubic.gemma.core.analysis.sequence

Class CompositeSequenceMapValueObject

java.lang.Object

ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject

All Implemented Interfaces:

Serializable, Comparable<CompositeSequenceMapValueObject>

public class CompositeSequenceMapValueObject
extends Object
implements Comparable<CompositeSequenceMapValueObject>, Serializable

Author:

jsantos

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
CompositeSequenceMapValueObject()

Method Summary

Modifier and Type	Method	Description
int	compareTo(CompositeSequenceMapValueObject o)
boolean	equals(Object obj)
static CompositeSequenceMapValueObject	fromEntity(CompositeSequence cs)
Long	getArrayDesignId()
String	getArrayDesignName()
String	getArrayDesignShortName()
String	getBioSequenceId()
String	getBioSequenceName()
String	getBioSequenceNcbiId()
String	getCompositeSequenceDescription()
String	getCompositeSequenceId()
String	getCompositeSequenceName()
Map<Long,GeneProductValueObject>	getGeneProducts()
Map<Long,GeneValueObject>	getGenes()
Integer	getNumBlatHits()
int	hashCode()
void	setArrayDesignId(Long arrayDesignId)
void	setArrayDesignName(String arrayDesignName)
void	setArrayDesignShortName(String arrayDesignShortName)
void	setBioSequenceId(String bioSequenceId)
void	setBioSequenceName(String bioSequenceName)
void	setBioSequenceNcbiId(String bioSequenceNcbiId)
void	setCompositeSequenceDescription(String compositeSequenceDescription)
void	setCompositeSequenceId(String compositeSequenceId)
void	setCompositeSequenceName(String compositeSequenceName)
void	setGeneProducts(Map<Long,GeneProductValueObject> geneProducts)
void	setGenes(Map<Long,GeneValueObject> genes)
void	setNumBlatHits(Integer numBlatHits)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompositeSequenceMapValueObject

public CompositeSequenceMapValueObject()

Method Detail

fromEntity

public static CompositeSequenceMapValueObject fromEntity(CompositeSequence cs)

compareTo

public int compareTo(CompositeSequenceMapValueObject o)

Specified by:

compareTo in interface Comparable<CompositeSequenceMapValueObject>

getArrayDesignId

public Long getArrayDesignId()

setArrayDesignId

public void setArrayDesignId(Long arrayDesignId)

getArrayDesignName

public String getArrayDesignName()

setArrayDesignName

public void setArrayDesignName(String arrayDesignName)

getArrayDesignShortName

public String getArrayDesignShortName()

setArrayDesignShortName

public void setArrayDesignShortName(String arrayDesignShortName)

getBioSequenceId

public String getBioSequenceId()

Returns:

the bioSequenceId

setBioSequenceId

public void setBioSequenceId(String bioSequenceId)

Parameters:

bioSequenceId - the bioSequenceId to set

getBioSequenceName

public String getBioSequenceName()

Returns:

the bioSequenceName

setBioSequenceName

public void setBioSequenceName(String bioSequenceName)

Parameters:

bioSequenceName - the bioSequenceName to set

getBioSequenceNcbiId

public String getBioSequenceNcbiId()

Returns:

the bioSequenceNcbiId

setBioSequenceNcbiId

public void setBioSequenceNcbiId(String bioSequenceNcbiId)

Parameters:

bioSequenceNcbiId - the bioSequenceNcbiId to set

getCompositeSequenceDescription

public String getCompositeSequenceDescription()

setCompositeSequenceDescription

public void setCompositeSequenceDescription(String compositeSequenceDescription)

getCompositeSequenceId

public String getCompositeSequenceId()

Returns:

the compositeSequenceId

setCompositeSequenceId

public void setCompositeSequenceId(String compositeSequenceId)

Parameters:

compositeSequenceId - the compositeSequenceId to set

getCompositeSequenceName

public String getCompositeSequenceName()

Returns:

the compositeSequenceName

setCompositeSequenceName

public void setCompositeSequenceName(String compositeSequenceName)

Parameters:

compositeSequenceName - the compositeSequenceName to set

getGeneProducts

public Map<Long,GeneProductValueObject> getGeneProducts()

Returns:

the geneProducts

setGeneProducts

public void setGeneProducts(Map<Long,GeneProductValueObject> geneProducts)

Parameters:

geneProducts - the geneProducts to set

getGenes

public Map<Long,GeneValueObject> getGenes()

Returns:

the genes

setGenes

public void setGenes(Map<Long,GeneValueObject> genes)

Parameters:

genes - the genes to set

getNumBlatHits

public Integer getNumBlatHits()

Returns:

the numBlatHits

setNumBlatHits

public void setNumBlatHits(Integer numBlatHits)

Parameters:

numBlatHits - the numBlatHits to set

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object