Uses of Class
ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject

Packages that use CompositeSequenceMapValueObject

Package	Description
ubic.gemma.core.analysis.sequence
ubic.gemma.web.controller.expression.arrayDesign
ubic.gemma.web.controller.expression.designElement

Uses of CompositeSequenceMapValueObject in ubic.gemma.core.analysis.sequence

Methods in ubic.gemma.core.analysis.sequence that return CompositeSequenceMapValueObject

Modifier and Type	Method	Description
static CompositeSequenceMapValueObject	CompositeSequenceMapValueObject.fromEntity(CompositeSequence cs)

Methods in ubic.gemma.core.analysis.sequence that return types with arguments of type CompositeSequenceMapValueObject

Modifier and Type	Method	Description
Collection<CompositeSequenceMapValueObject>	ArrayDesignMapResultService.getSummaryMapValueObjects(Collection<Object[]> sequenceData)	FIXME this is only public so we can use it in the DesignElementController; need refactoring (see CompositeSequenceService) Function to get a collection of CompositeSequenceMapValueObjects that contain information about a composite sequence and related tables.
Collection<CompositeSequenceMapValueObject>	ArrayDesignMapResultService.getSummaryMapValueObjects(ArrayDesign arrayDesign)
Collection<CompositeSequenceMapValueObject>	ArrayDesignMapResultServiceImpl.getSummaryMapValueObjects(Collection<Object[]> sequenceData)
Collection<CompositeSequenceMapValueObject>	ArrayDesignMapResultServiceImpl.getSummaryMapValueObjects(ArrayDesign arrayDesign)

Methods in ubic.gemma.core.analysis.sequence with parameters of type CompositeSequenceMapValueObject

Modifier and Type	Method	Description
int	CompositeSequenceMapValueObject.compareTo(CompositeSequenceMapValueObject o)

Uses of CompositeSequenceMapValueObject in ubic.gemma.web.controller.expression.arrayDesign

Methods in ubic.gemma.web.controller.expression.arrayDesign that return types with arguments of type CompositeSequenceMapValueObject

Modifier and Type	Method	Description
Collection<CompositeSequenceMapValueObject>	ArrayDesignController.getCsSummaries(EntityDelegator<ArrayDesign> ed)
Collection<CompositeSequenceMapValueObject>	ArrayDesignController.getDesignSummaries(ArrayDesign arrayDesign)

Uses of CompositeSequenceMapValueObject in ubic.gemma.web.controller.expression.designElement

Methods in ubic.gemma.web.controller.expression.designElement that return types with arguments of type CompositeSequenceMapValueObject

Modifier and Type	Method	Description
Collection<CompositeSequenceMapValueObject>	CompositeSequenceController.getCsSummaries(Collection<Long> ids)	Exposed for AJAX calls (Probe browser) FIXME can probably remove soon since we should use getGeneCsSummaries? Might be another use for this
Collection<CompositeSequenceMapValueObject>	CompositeSequenceController.getGeneCsSummaries(Long geneId)	Exposed for AJAX calls (Elements tab on gene details page)
Collection<CompositeSequenceMapValueObject>	CompositeSequenceController.search(String searchString, String arrayDesignId)