Class SingleCellExpressionExperimentSubSetServiceImpl
java.lang.Object
ubic.gemma.core.analysis.singleCell.aggregate.SingleCellExpressionExperimentSubSetServiceImpl
- All Implemented Interfaces:
SingleCellExpressionExperimentSubSetService
@Service
public class SingleCellExpressionExperimentSubSetServiceImpl
extends Object
implements SingleCellExpressionExperimentSubSetService
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptioncreateSubSets(ExpressionExperiment ee, CellLevelCharacteristics clc, ExperimentalFactor factor, Map<Characteristic, FactorValue> mappedCellTypeFactors, SingleCellExperimentSubSetsCreationConfig config) Subset biomaterials and bioassays by the givenCellLevelCharacteristics.Subset a single-cell dataset by preferred cell type assignment the cell type factor and the
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Constructor Details
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SingleCellExpressionExperimentSubSetServiceImpl
public SingleCellExpressionExperimentSubSetServiceImpl()
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Method Details
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createSubSetsByCellType
@Transactional public List<ExpressionExperimentSubSet> createSubSetsByCellType(ExpressionExperiment ee, SingleCellExperimentSubSetsCreationConfig config) Description copied from interface:SingleCellExpressionExperimentSubSetServiceSubset a single-cell dataset by preferred cell type assignment the cell type factor and theThe dataset must have a preferred
CellTypeAssignmentand a cell type factor in its experimental design.- Specified by:
createSubSetsByCellTypein interfaceSingleCellExpressionExperimentSubSetService
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createSubSets
@Transactional public List<ExpressionExperimentSubSet> createSubSets(ExpressionExperiment ee, CellLevelCharacteristics clc, ExperimentalFactor factor, Map<Characteristic, FactorValue> mappedCellTypeFactors, SingleCellExperimentSubSetsCreationConfig config) Description copied from interface:SingleCellExpressionExperimentSubSetServiceSubset biomaterials and bioassays by the givenCellLevelCharacteristics.This method will:
- create sub-
BioMaterials for each subject and cell type - create corresponding
BioAssays for the sub-BioMaterials - attach the
BioAssays toExpressionExperimentSubSet
- Specified by:
createSubSetsin interfaceSingleCellExpressionExperimentSubSetService- Returns:
- a list of subsets representing subpopulations of cells
- create sub-
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