Uses of Class
ubic.gemma.core.analysis.singleCell.aggregate.SplitConfig

Packages that use SplitConfig

Package	Description
ubic.gemma.core.analysis.singleCell.aggregate	This packge contains classes for splitting and aggregating single-cell data.

Uses of SplitConfig in ubic.gemma.core.analysis.singleCell.aggregate

Methods in ubic.gemma.core.analysis.singleCell.aggregate with parameters of type SplitConfig

Modifier and Type	Method	Description
List<ExpressionExperimentSubSet>	SingleCellExpressionExperimentSplitService.split(ExpressionExperiment ee, CellLevelCharacteristics clc, ExperimentalFactor factor, Map<Characteristic,FactorValue> cellTypeMapping, SplitConfig config)	Split biomaterials and bioassays by the given CellLevelCharacteristics.
List<ExpressionExperimentSubSet>	SingleCellExpressionExperimentSplitServiceImpl.split(ExpressionExperiment ee, CellLevelCharacteristics clc, ExperimentalFactor factor, Map<Characteristic,FactorValue> mappedCellTypeFactors, SplitConfig config)
QuantitationType	SingleCellExpressionExperimentSplitAndAggregateService.splitAndAggregate(ExpressionExperiment expressionExperiment, QuantitationType scQt, CellLevelCharacteristics cta, ExperimentalFactor cellTypeFactor, Map<Characteristic,FactorValue> c2f, SplitConfig splitConfig, AggregateConfig config)	Split and aggregate by any cell-level characteristics.
QuantitationType	SingleCellExpressionExperimentSplitAndAggregateServiceImpl.splitAndAggregate(ExpressionExperiment expressionExperiment, QuantitationType scQt, CellLevelCharacteristics clc, ExperimentalFactor cellTypeFactor, Map<Characteristic,FactorValue> c2f, SplitConfig splitConfig, AggregateConfig config)
QuantitationType	SingleCellExpressionExperimentSplitAndAggregateService.splitAndAggregateByCellType(ExpressionExperiment expressionExperiment, SplitConfig splitConfig, AggregateConfig config)	Split and aggregate by cell type.
QuantitationType	SingleCellExpressionExperimentSplitAndAggregateServiceImpl.splitAndAggregateByCellType(ExpressionExperiment expressionExperiment, SplitConfig splitConfig, AggregateConfig config)
List<ExpressionExperimentSubSet>	SingleCellExpressionExperimentSplitService.splitByCellType(ExpressionExperiment ee, SplitConfig config)	Split a single-cell dataset by cell type.
List<ExpressionExperimentSubSet>	SingleCellExpressionExperimentSplitServiceImpl.splitByCellType(ExpressionExperiment ee, SplitConfig config)