Interface SingleCellDerivedBulkExpressionDataMatrix<T>

All Superinterfaces:

BulkExpressionDataMatrix<T>, ExpressionDataMatrix<T>

All Known Implementing Classes:

ExpressionDataDoubleMatrix

public interface SingleCellDerivedBulkExpressionDataMatrix<T>
extends BulkExpressionDataMatrix<T>

A BulkExpressionDataMatrix that was derived from a SingleCellExpressionDataMatrix.

It allows querying the number of cells behind individual entries of the matrix.

The methods of this interface return null if the number of cells is not populated.

Author:

poirigui

Method Summary

Modifier and Type	Method	Description
int[][]	getNumberOfCells()
Integer	getNumberOfCells(int row, int column)
int[]	getNumberOfCellsForColumn(int row)
int[]	getNumberOfCellsForColumn(BioMaterial bioMaterial)
int[]	getNumberOfCellsForRow(int row)
int[]	getNumberOfCellsForRow(CompositeSequence designElement)

Methods inherited from interface BulkExpressionDataMatrix

get, getBioAssayDimension, getBioAssayForColumn, getBioMaterialForColumn, getBioMaterials, getColumn, getColumnIndex, getColumnIndex, getRawMatrix, hasMissingValues, sliceColumns, sliceColumns

Methods inherited from interface ExpressionDataMatrix

columns, get, getColumn, getDesignElementForRow, getDesignElements, getExpressionExperiment, getQuantitationType, getRow, getRow, getRowElement, getRowElements, getRowIndex, getRowIndices, rows, sliceRows

Method Details

getNumberOfCells

@Nullable
int[][] getNumberOfCells()

getNumberOfCells

@Nullable
Integer getNumberOfCells(int row,
 int column)

getNumberOfCellsForColumn

@Nullable
int[] getNumberOfCellsForColumn(int row)

getNumberOfCellsForColumn

@Nullable
int[] getNumberOfCellsForColumn(BioMaterial bioMaterial)

getNumberOfCellsForRow

@Nullable
int[] getNumberOfCellsForRow(int row)

getNumberOfCellsForRow

@Nullable
int[] getNumberOfCellsForRow(CompositeSequence designElement)