Package ubic.gemma.core.datastructure.matrix

Interface SingleCellDerivedBulkExpressionDataMatrix<T>

All Superinterfaces:

BulkExpressionDataMatrix<T>, ExpressionDataMatrix<T>

All Known Implementing Classes:

ExpressionDataDoubleMatrix

public interface SingleCellDerivedBulkExpressionDataMatrix<T>
extends BulkExpressionDataMatrix<T>

A BulkExpressionDataMatrix that was derived from a SingleCellExpressionDataMatrix.

It allows querying the number of cells behind individual entries of the matrix.

The methods of this interface return null if the number of cells is not populated.

Author:

poirigui

Method Summary

Modifier and Type	Method	Description
int[][]	getNumberOfCells()
Integer	getNumberOfCells(int row, int column)
int[]	getNumberOfCellsForColumn(int row)
int[]	getNumberOfCellsForColumn(BioMaterial bioMaterial)
int[]	getNumberOfCellsForRow(int row)
int[]	getNumberOfCellsForRow(CompositeSequence designElement)

Methods inherited from interface ubic.gemma.core.datastructure.matrix.BulkExpressionDataMatrix

get, getBioAssayDimension, getBioAssayForColumn, getBioMaterialForColumn, getBioMaterials, getColumn, getColumnIndex, getColumnIndex, getRawMatrix, hasMissingValues, sliceColumns, sliceColumns

Methods inherited from interface ubic.gemma.core.datastructure.matrix.ExpressionDataMatrix

columns, get, getColumn, getDesignElementForRow, getDesignElements, getExpressionExperiment, getQuantitationType, getRow, getRow, getRowElement, getRowElements, getRowIndex, getRowIndices, rows, sliceRows

Method Details

getNumberOfCells

@Nullable
int[][] getNumberOfCells()

getNumberOfCells

@Nullable
Integer getNumberOfCells(int row,
 int column)

getNumberOfCellsForColumn

@Nullable
int[] getNumberOfCellsForColumn(int row)

getNumberOfCellsForColumn

@Nullable
int[] getNumberOfCellsForColumn(BioMaterial bioMaterial)

getNumberOfCellsForRow

@Nullable
int[] getNumberOfCellsForRow(int row)

getNumberOfCellsForRow

@Nullable
int[] getNumberOfCellsForRow(CompositeSequence designElement)