Map<String,Collection<BlatAssociation>> |
ProbeMapper.processBlatResults(GoldenPathSequenceAnalysis goldenPathDb,
Collection<BlatResult> blatResults) |
Given some blat results (possibly for multiple sequences) determine which if any gene products they should be
associatd with; if there are multiple results for a single sequence, these are further analyzed for specificity
and redundancy, so that there is a single BlatAssociation between any sequence andy andy gene product.
|
Map<String,Collection<BlatAssociation>> |
ProbeMapper.processBlatResults(GoldenPathSequenceAnalysis goldenPathDb,
Collection<BlatResult> blatResults,
ProbeMapperConfig config) |
Given some blat results (possibly for multiple sequences) determine which if any gene products they should be
associated with; if there are multiple results for a single sequence, these are further analyzed for specificity
and redundancy, so that there is a single BlatAssociation between any sequence andy andy gene product.
|
Map<String,Collection<BlatAssociation>> |
ProbeMapperImpl.processBlatResults(GoldenPathSequenceAnalysis goldenPathDb,
Collection<BlatResult> blatResults) |
|
Map<String,Collection<BlatAssociation>> |
ProbeMapperImpl.processBlatResults(GoldenPathSequenceAnalysis goldenPathDb,
Collection<BlatResult> blatResults,
ProbeMapperConfig config) |
|
Map<String,Collection<BlatAssociation>> |
ProbeMapper.processGbId(GoldenPathSequenceAnalysis goldenPathDb,
String genbankId) |
Given a genbank accession (for a mRNA or EST), find alignment data from GoldenPath.
|
Map<String,Collection<BlatAssociation>> |
ProbeMapperImpl.processGbId(GoldenPathSequenceAnalysis goldenPathDb,
String genbankId) |
|
Map<String,Collection<BlatAssociation>> |
ProbeMapper.processGbIds(GoldenPathSequenceAnalysis goldenPathDb,
Collection<String[]> genbankIds) |
|
Map<String,Collection<BlatAssociation>> |
ProbeMapperImpl.processGbIds(GoldenPathSequenceAnalysis goldenPathDb,
Collection<String[]> genbankIds) |
|
Collection<BlatAssociation> |
ProbeMapper.processSequence(GoldenPathSequenceAnalysis goldenPath,
BioSequence sequence) |
Get BlatAssociation results for a single sequence.
|
Collection<BlatAssociation> |
ProbeMapperImpl.processSequence(GoldenPathSequenceAnalysis goldenPath,
BioSequence sequence) |
|
Map<String,Collection<BlatAssociation>> |
ProbeMapper.processSequences(GoldenPathSequenceAnalysis goldenpath,
Collection<BioSequence> sequences,
ProbeMapperConfig config) |
Given a collection of sequences, blat them against the selected genome.
|
Map<String,Collection<BlatAssociation>> |
ProbeMapperImpl.processSequences(GoldenPathSequenceAnalysis goldenpath,
Collection<BioSequence> sequences,
ProbeMapperConfig config) |
|