Uses of Class
ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject

Packages that use SessionBoundGeneSetValueObject

Package	Description
ubic.gemma.core.genome.gene
ubic.gemma.core.genome.gene.service
ubic.gemma.core.search
ubic.gemma.web.controller.genome.gene
ubic.gemma.web.persistence

Uses of SessionBoundGeneSetValueObject in ubic.gemma.core.genome.gene

Subclasses of SessionBoundGeneSetValueObject in ubic.gemma.core.genome.gene

Modifier and Type	Class	Description
class	FreeTextGeneResultsValueObject	*
class	GOGroupValueObject
class	PhenotypeGroupValueObject

Uses of SessionBoundGeneSetValueObject in ubic.gemma.core.genome.gene.service

Methods in ubic.gemma.core.genome.gene.service with parameters of type SessionBoundGeneSetValueObject

Modifier and Type	Method	Description
TaxonValueObject	GeneSetService.getTaxonVOforGeneSetVO(SessionBoundGeneSetValueObject geneSetVO)	get the taxon for the gene set parameter, assumes that the taxon of the first gene will be representational of all the genes
TaxonValueObject	GeneSetServiceImpl.getTaxonVOforGeneSetVO(SessionBoundGeneSetValueObject geneSetVO)

Uses of SessionBoundGeneSetValueObject in ubic.gemma.core.search

Constructors in ubic.gemma.core.search with parameters of type SessionBoundGeneSetValueObject

Constructor	Description
SearchResultDisplayObject(SessionBoundGeneSetValueObject geneSet)

Uses of SessionBoundGeneSetValueObject in ubic.gemma.web.controller.genome.gene

Methods in ubic.gemma.web.controller.genome.gene that return SessionBoundGeneSetValueObject

Modifier and Type	Method	Description
SessionBoundGeneSetValueObject	GeneSetController.addSessionGroup(SessionBoundGeneSetValueObject gsvo, Boolean modificationBased)	* AJAX adds the gene group to the session, used by SessionGeneGroupStore and SessionDatasetGroupStore sets the groups taxon value and reference.
SessionBoundGeneSetValueObject	GeneSetController.updateSessionGroup(SessionBoundGeneSetValueObject vos)	AJAX updates a session group

Methods in ubic.gemma.web.controller.genome.gene that return types with arguments of type SessionBoundGeneSetValueObject

Modifier and Type	Method	Description
Collection<SessionBoundGeneSetValueObject>	GeneSetController.addSessionGroups(Collection<SessionBoundGeneSetValueObject> geneSetVos, Boolean modificationBased)	Deprecated.
Collection<SessionBoundGeneSetValueObject>	GeneSetController.getUserSessionGeneGroups(boolean privateOnly, Long taxonId)	AJAX Returns just the current users gene sets
Collection<SessionBoundGeneSetValueObject>	GeneSetController.removeSessionGroups(Collection<SessionBoundGeneSetValueObject> vos)	Deprecated.
Collection<SessionBoundGeneSetValueObject>	GeneSetController.updateSessionGroups(Collection<SessionBoundGeneSetValueObject> vos)	Deprecated.

Methods in ubic.gemma.web.controller.genome.gene with parameters of type SessionBoundGeneSetValueObject

Modifier and Type	Method	Description
SessionBoundGeneSetValueObject	GeneSetController.addSessionGroup(SessionBoundGeneSetValueObject gsvo, Boolean modificationBased)	* AJAX adds the gene group to the session, used by SessionGeneGroupStore and SessionDatasetGroupStore sets the groups taxon value and reference.
SessionBoundGeneSetValueObject	GeneSetController.updateSessionGroup(SessionBoundGeneSetValueObject vos)	AJAX updates a session group

Method parameters in ubic.gemma.web.controller.genome.gene with type arguments of type SessionBoundGeneSetValueObject

Modifier and Type	Method	Description
Collection<SessionBoundGeneSetValueObject>	GeneSetController.addSessionGroups(Collection<SessionBoundGeneSetValueObject> geneSetVos, Boolean modificationBased)	Deprecated.
Collection<SessionBoundGeneSetValueObject>	GeneSetController.removeSessionGroups(Collection<SessionBoundGeneSetValueObject> vos)	Deprecated.
Collection<SessionBoundGeneSetValueObject>	GeneSetController.updateSessionGroups(Collection<SessionBoundGeneSetValueObject> vos)	Deprecated.

Uses of SessionBoundGeneSetValueObject in ubic.gemma.web.persistence

Methods in ubic.gemma.web.persistence that return SessionBoundGeneSetValueObject

Modifier and Type	Method	Description
SessionBoundGeneSetValueObject	SessionListManager.addGeneSet(SessionBoundGeneSetValueObject gsvo)
SessionBoundGeneSetValueObject	SessionListManager.addGeneSet(SessionBoundGeneSetValueObject gsvo, boolean modified)
SessionBoundGeneSetValueObject	SessionListManagerImpl.addGeneSet(SessionBoundGeneSetValueObject gsvo)
SessionBoundGeneSetValueObject	SessionListManagerImpl.addGeneSet(SessionBoundGeneSetValueObject gsvo, boolean modified)
SessionBoundGeneSetValueObject	SessionListManager.getGeneSetById(Long id)	Get the session-bound group using the group's id
SessionBoundGeneSetValueObject	SessionListManagerImpl.getGeneSetById(Long id)

Methods in ubic.gemma.web.persistence that return types with arguments of type SessionBoundGeneSetValueObject

Modifier and Type	Method	Description
Collection<SessionBoundGeneSetValueObject>	SessionListManager.getAllGeneSets()
Collection<SessionBoundGeneSetValueObject>	SessionListManager.getAllGeneSets(Long taxonId)
Collection<SessionBoundGeneSetValueObject>	SessionListManagerImpl.getAllGeneSets()
Collection<SessionBoundGeneSetValueObject>	SessionListManagerImpl.getAllGeneSets(Long taxonId)
Collection<SessionBoundGeneSetValueObject>	SessionListManager.getModifiedGeneSets()
Collection<SessionBoundGeneSetValueObject>	SessionListManager.getModifiedGeneSets(Long taxonId)
Collection<SessionBoundGeneSetValueObject>	SessionListManagerImpl.getModifiedGeneSets()
Collection<SessionBoundGeneSetValueObject>	SessionListManagerImpl.getModifiedGeneSets(Long taxonId)

Methods in ubic.gemma.web.persistence with parameters of type SessionBoundGeneSetValueObject

Modifier and Type	Method	Description
SessionBoundGeneSetValueObject	SessionListManager.addGeneSet(SessionBoundGeneSetValueObject gsvo)
SessionBoundGeneSetValueObject	SessionListManager.addGeneSet(SessionBoundGeneSetValueObject gsvo, boolean modified)
SessionBoundGeneSetValueObject	SessionListManagerImpl.addGeneSet(SessionBoundGeneSetValueObject gsvo)
SessionBoundGeneSetValueObject	SessionListManagerImpl.addGeneSet(SessionBoundGeneSetValueObject gsvo, boolean modified)
void	SessionListManager.removeGeneSet(SessionBoundGeneSetValueObject gsvo)
void	SessionListManagerImpl.removeGeneSet(SessionBoundGeneSetValueObject gsvo)
void	SessionListManager.updateGeneSet(SessionBoundGeneSetValueObject gsvo)
void	SessionListManagerImpl.updateGeneSet(SessionBoundGeneSetValueObject gsvo)