Package ubic.gemma.core.loader.expression.sequencing

Interface SequencingDataLoader

All Superinterfaces:

AutoCloseable, Closeable, DataLoader

All Known Subinterfaces:

SingleCellDataLoader

All Known Implementing Classes:

AbstractDelegatingSequencingDataLoader, AbstractDelegatingSingleCellDataLoader, AnnDataSingleCellDataLoader, GenericMetadataSingleCellDataLoader, MexSingleCellDataLoader, NullSingleCellDataLoader, SequencingMetadataFileDataLoader, SequencingMetadataFileSingleCellDataLoader

public interface SequencingDataLoader
extends DataLoader

An interface for data loaders that can load sequencing data.

Author:

poirigui

Method Summary

Modifier and Type	Method	Description
Map<BioAssay,SequencingMetadata>	getSequencingMetadata(Collection<BioAssay> samples)	Retrieve various sequencing metadata if counting data is present.

Methods inherited from interface ubic.gemma.core.loader.expression.DataLoader

close, getFactors, getGenes, getQuantitationTypes, getSampleNames, getSamplesCharacteristics, setBioAssayToSampleNameMapper, setDesignElementToGeneMapper, setIgnoreUnmatchedDesignElements, setIgnoreUnmatchedSamples

Method Details

getSequencingMetadata

Map<BioAssay,SequencingMetadata> getSequencingMetadata(Collection<BioAssay> samples)
                                                throws IOException

Retrieve various sequencing metadata if counting data is present.

Throws:

IOException