Uses of Interface
ubic.gemma.core.loader.expression.sequencing.SequencingDataLoader

Packages that use SequencingDataLoader

Package	Description
ubic.gemma.core.loader.expression.sequencing	This package contains interfaces and classes for loading sequencing data.
ubic.gemma.core.loader.expression.singleCell	This package contains classes for loading single cell expression data.
ubic.gemma.core.loader.expression.singleCell.metadata	This package contains classes for loading single-cell metadata such as cell type assignment and cell-level characteristics.

Uses of SequencingDataLoader in ubic.gemma.core.loader.expression.sequencing

Classes in ubic.gemma.core.loader.expression.sequencing that implement SequencingDataLoader

Modifier and Type	Class	Description
class	AbstractDelegatingSequencingDataLoader
class	SequencingMetadataFileDataLoader	Load sequencing metadata from a TSV file.

Constructors in ubic.gemma.core.loader.expression.sequencing with parameters of type SequencingDataLoader

Constructor	Description
AbstractDelegatingSequencingDataLoader(SequencingDataLoader delegate)
SequencingMetadataFileDataLoader(SequencingDataLoader delegate, Path sequencingMetadataFile, SequencingMetadata defaultMetadata, BioAssayMapper bioAssayMapper)

Uses of SequencingDataLoader in ubic.gemma.core.loader.expression.singleCell

Subinterfaces of SequencingDataLoader in ubic.gemma.core.loader.expression.singleCell

Modifier and Type	Interface	Description
interface	SingleCellDataLoader	Common interface for all single cell data loaders.

Classes in ubic.gemma.core.loader.expression.singleCell that implement SequencingDataLoader

Modifier and Type	Class	Description
class	AbstractDelegatingSingleCellDataLoader
class	AnnDataSingleCellDataLoader	Reads single-cell vectors from the AnnData on-disk HDF5 format.
class	MexSingleCellDataLoader	Load single cell data from 10X Genomics MEX format.
class	NullSingleCellDataLoader	Single-cell data loader used when no data is available.
class	SequencingMetadataFileSingleCellDataLoader	Adapt a SequencingMetadataFileDataLoader so that it can be used as a SingleCellDataLoader.

Uses of SequencingDataLoader in ubic.gemma.core.loader.expression.singleCell.metadata

Classes in ubic.gemma.core.loader.expression.singleCell.metadata that implement SequencingDataLoader

Modifier and Type	Class	Description
class	GenericMetadataSingleCellDataLoader	A generic loader that can be used to load single cell with a tabular metadata file.