Package ubic.gemma.core.loader.expression.simple.model

Class SimpleExpressionExperimentMetaData

java.lang.Object

ubic.gemma.core.job.TaskCommand

ubic.gemma.core.loader.expression.simple.model.SimpleExpressionExperimentMetaData

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

SimpleExpressionExperimentLoadTaskCommand

public class SimpleExpressionExperimentMetaData
extends TaskCommand

Represents the basic data to enter about an expression experiment when starting from a delimited file of data

Author:

pavlidis

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.core.job.TaskCommand

MAX_QUEUING_MINUTES, MAX_RUNTIME_MINUTES

Constructor Summary

Constructors

Constructor	Description
SimpleExpressionExperimentMetaData()

Method Summary

Modifier and Type	Method	Description
Collection<Long>	getArrayDesignIds()
Collection<ArrayDesign>	getArrayDesigns()
String	getDescription()
String	getExperimentalDesignDescription()
String	getExperimentalDesignName()
DatabaseEntry	getExternalReference()
GeneralType	getGeneralType()
Boolean	getIsBatchCorrected()
Boolean	getIsMaskedPreferred()
Boolean	getIsRatio()
String	getName()
Integer	getPubMedId()
String	getQuantitationTypeDescription()
String	getQuantitationTypeName()
ScaleType	getScale()
String	getShortName()
String	getSourceUrl()
Class<? extends Task<? extends TaskCommand>>	getTaskClass()
Taxon	getTaxon()
Long	getTaxonId()
TechnologyType	getTechnologyType()
StandardQuantitationType	getType()
Contact	getUser()
boolean	isProbeIdsAreImageClones()
void	setArrayDesignIds(Collection<Long> arrayDesignIds)
void	setArrayDesigns(Collection<ArrayDesign> arrayDesigns)
void	setDescription(String description)
void	setExperimentalDesignDescription(String experimentalDesignDescription)
void	setExperimentalDesignName(String experimentalDesignName)
void	setExternalReference(DatabaseEntry externalReference)
void	setGeneralType(GeneralType generalType)
void	setIsBatchCorrected(Boolean isBatchCorrected)
void	setIsMaskedPreferred(Boolean isMaskedPreferred)
void	setIsRatio(Boolean isRatio)
void	setName(String name)
void	setProbeIdsAreImageClones(boolean probeIdsAreImageClones)
void	setPubMedId(Integer pubMedId)
void	setQuantitationTypeDescription(String quantitationTypeDescription)
void	setQuantitationTypeName(String quantitationTypeName)
void	setScale(ScaleType scale)
void	setShortName(String shortName)
void	setSourceUrl(String sourceUrl)
void	setTaxon(Taxon taxon)
void	setTaxonId(Long taxonId)
void	setTechnologyType(TechnologyType technologyType)
void	setType(StandardQuantitationType type)
void	setUser(Contact user)

Methods inherited from class ubic.gemma.core.job.TaskCommand

getEntityId, getMaxQueueMinutes, getMaxRuntime, getPersistJobDetails, getSecurityContext, getSubmitter, getTaskId, isEmailAlert, setEmailAlert, setEntityId, setMaxQueueMinutes, setMaxRuntime, setPersistJobDetails, setTaskId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleExpressionExperimentMetaData

public SimpleExpressionExperimentMetaData()

Method Detail

getArrayDesignIds

public Collection<Long> getArrayDesignIds()

setArrayDesignIds

public void setArrayDesignIds(Collection<Long> arrayDesignIds)

getArrayDesigns

public Collection<ArrayDesign> getArrayDesigns()

setArrayDesigns

public void setArrayDesigns(Collection<ArrayDesign> arrayDesigns)

getDescription

public String getDescription()

Returns:

the description

setDescription

public void setDescription(String description)

Parameters:

description - the description to set

getExperimentalDesignDescription

public String getExperimentalDesignDescription()

setExperimentalDesignDescription

public void setExperimentalDesignDescription(String experimentalDesignDescription)

getExperimentalDesignName

public String getExperimentalDesignName()

setExperimentalDesignName

public void setExperimentalDesignName(String experimentalDesignName)

getExternalReference

public DatabaseEntry getExternalReference()

Returns:

the externalReference

setExternalReference

public void setExternalReference(DatabaseEntry externalReference)

Parameters:

externalReference - the externalReference to set

getGeneralType

public GeneralType getGeneralType()

Returns:

the generalType

setGeneralType

public void setGeneralType(GeneralType generalType)

Parameters:

generalType - the generalType to set

getIsBatchCorrected

public Boolean getIsBatchCorrected()

Returns:

the isBatchCorrected

setIsBatchCorrected

public void setIsBatchCorrected(Boolean isBatchCorrected)

Parameters:

isBatchCorrected - the isBatchCorrected to set

getIsMaskedPreferred

public Boolean getIsMaskedPreferred()

setIsMaskedPreferred

public void setIsMaskedPreferred(Boolean isMaskedPreferred)

getIsRatio

public Boolean getIsRatio()

setIsRatio

public void setIsRatio(Boolean isRatio)

getName

public String getName()

Returns:

the name

setName

public void setName(String name)

Parameters:

name - the name to set

getPubMedId

public Integer getPubMedId()

Returns:

the pubMedId

setPubMedId

public void setPubMedId(Integer pubMedId)

Parameters:

pubMedId - the pubMedId to set

getQuantitationTypeDescription

public String getQuantitationTypeDescription()

Returns:

the quantitationTypeDescription

setQuantitationTypeDescription

public void setQuantitationTypeDescription(String quantitationTypeDescription)

Parameters:

quantitationTypeDescription - the quantitationTypeDescription to set

getQuantitationTypeName

public String getQuantitationTypeName()

Returns:

the quantitationTypeName

setQuantitationTypeName

public void setQuantitationTypeName(String quantitationTypeName)

Parameters:

quantitationTypeName - the quantitationTypeName to set

getScale

public ScaleType getScale()

Returns:

the scale

setScale

public void setScale(ScaleType scale)

Parameters:

scale - the scale to set

getShortName

public String getShortName()

setShortName

public void setShortName(String shortName)

getSourceUrl

public String getSourceUrl()

setSourceUrl

public void setSourceUrl(String sourceUrl)

getTaskClass

public Class<? extends Task<? extends TaskCommand>> getTaskClass()

Overrides:

getTaskClass in class TaskCommand

getTaxon

public Taxon getTaxon()

setTaxon

public void setTaxon(Taxon taxon)

getTaxonId

public Long getTaxonId()

setTaxonId

public void setTaxonId(Long taxonId)

getTechnologyType

public TechnologyType getTechnologyType()

setTechnologyType

public void setTechnologyType(TechnologyType technologyType)

getType

public StandardQuantitationType getType()

Returns:

the type

setType

public void setType(StandardQuantitationType type)

Parameters:

type - the type to set

getUser

public Contact getUser()

Returns:

the user

setUser

public void setUser(Contact user)

Parameters:

user - the user to set

isProbeIdsAreImageClones

public boolean isProbeIdsAreImageClones()

setProbeIdsAreImageClones

public void setProbeIdsAreImageClones(boolean probeIdsAreImageClones)