Uses of Package
ubic.gemma.core.loader.util.mapper

Packages that use ubic.gemma.core.loader.util.mapper

Package	Description
ubic.gemma.core.loader.expression	This package contains interfaces and classes for loading expression data.
ubic.gemma.core.loader.expression.geo.singleCell	This package contains specific logic for dealing with single-cell data from GEO.
ubic.gemma.core.loader.expression.sequencing	This package contains interfaces and classes for loading sequencing data.
ubic.gemma.core.loader.expression.singleCell	This package contains classes for loading single-cell expression data.
ubic.gemma.core.loader.expression.singleCell.metadata	This package contains classes for loading single-cell metadata such as cell type assignment and cell-level characteristics.
ubic.gemma.core.loader.util.mapper	Utilities for mapping Identifiable entities to external identifiers.

Classes in ubic.gemma.core.loader.util.mapper used by ubic.gemma.core.loader.expression

Class	Description
BioAssayMapper	Strategy used for comparing BioAssay to sample names from the data.
DesignElementMapper	Maps gene identifiers to CompositeSequence.

Classes in ubic.gemma.core.loader.util.mapper used by ubic.gemma.core.loader.expression.geo.singleCell

Class	Description
AbstractBioAssayMapper
BioAssayMapper	Strategy used for comparing BioAssay to sample names from the data.
EntityMapper	Map external identifiers to Gemma entities.
HintingEntityMapper	Interface for mappers that can provide hints of identifier candidates.

Classes in ubic.gemma.core.loader.util.mapper used by ubic.gemma.core.loader.expression.sequencing

Class	Description
BioAssayMapper	Strategy used for comparing BioAssay to sample names from the data.

Classes in ubic.gemma.core.loader.util.mapper used by ubic.gemma.core.loader.expression.singleCell

Class	Description
BioAssayMapper	Strategy used for comparing BioAssay to sample names from the data.
DesignElementMapper	Maps gene identifiers to CompositeSequence.

Classes in ubic.gemma.core.loader.util.mapper used by ubic.gemma.core.loader.expression.singleCell.metadata

Class	Description
BioAssayMapper	Strategy used for comparing BioAssay to sample names from the data.

Classes in ubic.gemma.core.loader.util.mapper used by ubic.gemma.core.loader.util.mapper

Class	Description
AbstractBioAssayMapper
AbstractGeneIdentifierBasedDesignElementMapper	Base class for design element mapper that use gene identifiers.
BioAssayMapper	Strategy used for comparing BioAssay to sample names from the data.
DesignElementMapper	Maps gene identifiers to CompositeSequence.
EntityMapper	Map external identifiers to Gemma entities.
EntityMapper.MappingStatistics	Mapping statistics computed from a given set of entities and identifiers.
EntityMapper.StatefulEntityMapper	A stateful entity mapper keeps an internal state for a set of candidates to optimize the mapping process.
HintingEntityMapper	Interface for mappers that can provide hints of identifier candidates.
MapBasedDesignElementMapper
MapBasedEntityMapper	A simple implementation of EntityMapper that uses a Map to store association between identifiers and entities.