Uses of Annotation Interface
ubic.gemma.core.security.audit.AuditedOnError

Packages that use AuditedOnError

Package	Description
ubic.gemma.core.analysis.expression.diff
ubic.gemma.core.analysis.preprocess	This package contains classes for preprocessing expression data.
ubic.gemma.core.loader.expression	This package contains interfaces and classes for loading expression data.
ubic.gemma.core.security.audit
ubic.gemma.persistence.service.expression.bioAssayData

Uses of AuditedOnError in ubic.gemma.core.analysis.expression.diff

Methods in ubic.gemma.core.analysis.expression.diff with annotations of type AuditedOnError

Modifier and Type	Method	Description
Collection<DifferentialExpressionAnalysis>	DifferentialExpressionAnalyzerServiceImpl.runDifferentialExpressionAnalyses(ExpressionExperiment expressionExperiment, DifferentialExpressionAnalysisConfig config)

Uses of AuditedOnError in ubic.gemma.core.analysis.preprocess

Methods in ubic.gemma.core.analysis.preprocess with annotations of type AuditedOnError

Modifier and Type	Method	Description
void	PreprocessorHelperServiceImpl.processForMeanVarianceRelation(ExpressionExperiment ee)	Create the scatter plot to evaluate heteroscedasticity.
void	PreprocessorHelperServiceImpl.processForPca(ExpressionExperiment ee)
void	PreprocessorHelperServiceImpl.processForSampleCorrelation(ExpressionExperiment ee)	Create the heatmaps used to judge similarity among samples.

Uses of AuditedOnError in ubic.gemma.core.loader.expression

Methods in ubic.gemma.core.loader.expression with annotations of type AuditedOnError

Modifier and Type	Method	Description
void	DataUpdaterImpl.reprocessAffyDataFromCel(ExpressionExperiment ee)	Affymetrix only: Provide or replace data for an Affymetrix-based experiment, using CEL files.

Uses of AuditedOnError in ubic.gemma.core.security.audit

Methods in ubic.gemma.core.security.audit with parameters of type AuditedOnError

Modifier and Type	Method	Description
void	AuditedAspect.afterAuditedOnErrorMethod(org.aspectj.lang.JoinPoint joinPoint, AuditedOnError auditedOnError, Throwable ex)	Phase C: AuditedOnError fires when the annotated method exits by throwing.

Uses of AuditedOnError in ubic.gemma.persistence.service.expression.bioAssayData

Methods in ubic.gemma.persistence.service.expression.bioAssayData with annotations of type AuditedOnError

Modifier and Type	Method	Description
QuantitationType	ProcessedExpressionDataVectorServiceImpl.createProcessedDataVectors(ExpressionExperiment expressionExperiment, boolean updateRanks, boolean ignoreQuantitationMismatch)
int	ProcessedExpressionDataVectorServiceImpl.removeProcessedDataVectors(ExpressionExperiment ee)
int	ProcessedExpressionDataVectorServiceImpl.replaceProcessedDataVectors(ExpressionExperiment ee, Collection<ProcessedExpressionDataVector> vectors, boolean updateRanks)
void	ProcessedExpressionDataVectorServiceImpl.updateRanks(ExpressionExperiment ee)