Uses of Interface
ubic.gemma.core.util.locking.LockedPath

Packages that use LockedPath

Package	Description
ubic.gemma.core.analysis.service
ubic.gemma.core.util.locking	Utilities for locking files.
ubic.gemma.rest.providers

Uses of LockedPath in ubic.gemma.core.analysis.service

Methods in ubic.gemma.core.analysis.service that return LockedPath

Modifier and Type	Method	Description
LockedPath	ExpressionDataFileService.getDataFile(String filename, boolean exclusive)	Locate any data file in the data directory.
LockedPath	ExpressionDataFileService.getDataFile(String filename, boolean exclusive, long timeout, TimeUnit timeUnit)
LockedPath	ExpressionDataFileService.getDataFile(ExpressionExperiment ee, QuantitationType qt, ExpressionExperimentDataFileType type, boolean exclusive, long timeout, TimeUnit timeUnit)
LockedPath	ExpressionDataFileServiceImpl.getDataFile(String filename, boolean exclusive)
LockedPath	ExpressionDataFileServiceImpl.getDataFile(String filename, boolean exclusive, long timeout, TimeUnit timeUnit)
LockedPath	ExpressionDataFileServiceImpl.getDataFile(ExpressionExperiment ee, QuantitationType qt, ExpressionExperimentDataFileType type, boolean exclusive, long timeout, TimeUnit timeUnit)
LockedPath	ExpressionDataFileService.getMetadataFile(ExpressionExperiment ee, String filename, boolean exclusive)
LockedPath	ExpressionDataFileService.getMetadataFile(ExpressionExperiment ee, String filename, boolean exclusive, long timeout, TimeUnit timeUnit)
LockedPath	ExpressionDataFileServiceImpl.getMetadataFile(ExpressionExperiment ee, String filename, boolean exclusive)
LockedPath	ExpressionDataFileServiceImpl.getMetadataFile(ExpressionExperiment ee, String filename, boolean exclusive, long timeout, TimeUnit timeUnit)
LockedPath	ExpressionDataFileService.writeDiffExAnalysisArchiveFile(DifferentialExpressionAnalysis analysis, DifferentialExpressionAnalysisConfig config)
LockedPath	ExpressionDataFileServiceImpl.writeDiffExAnalysisArchiveFile(DifferentialExpressionAnalysis analysis, DifferentialExpressionAnalysisConfig config)
LockedPath	ExpressionDataFileService.writeOrLocateCoexpressionDataFile(ExpressionExperiment ee, boolean forceWrite)	Write or located the coexpression data file for a given experiment
LockedPath	ExpressionDataFileServiceImpl.writeOrLocateCoexpressionDataFile(ExpressionExperiment ee, boolean forceWrite)
LockedPath	ExpressionDataFileService.writeOrLocateDiffExArchiveFile(Long analysisId, boolean forceCreate)	Locate or create the differential expression data file(s) for a given experiment.
LockedPath	ExpressionDataFileServiceImpl.writeOrLocateDiffExArchiveFile(Long analysisId, boolean forceCreate)
LockedPath	ExpressionDataFileService.writeOrLocateJSONRawExpressionDataFile(ExpressionExperiment ee, QuantitationType type, boolean forceWrite)
LockedPath	ExpressionDataFileServiceImpl.writeOrLocateJSONRawExpressionDataFile(ExpressionExperiment ee, QuantitationType type, boolean forceWrite)
LockedPath	ExpressionDataFileService.writeOrLocateMexSingleCellExpressionData(ExpressionExperiment ee, QuantitationType qt, int fetchSize, boolean forceWrite)	Write single-cell expression data to a standard location for a given quantitation type.
LockedPath	ExpressionDataFileServiceImpl.writeOrLocateMexSingleCellExpressionData(ExpressionExperiment ee, QuantitationType qt, int fetchSize, boolean forceWrite)
LockedPath	ExpressionDataFileService.writeOrLocateRawExpressionDataFile(ExpressionExperiment ee, QuantitationType type, boolean forceWrite)	Locate or create a new data file for the given quantitation type.
LockedPath	ExpressionDataFileService.writeOrLocateRawExpressionDataFile(ExpressionExperiment ee, QuantitationType qt, boolean forceWrite, long timeout, TimeUnit timeUnit)
LockedPath	ExpressionDataFileServiceImpl.writeOrLocateRawExpressionDataFile(ExpressionExperiment ee, QuantitationType type, boolean forceWrite)
LockedPath	ExpressionDataFileServiceImpl.writeOrLocateRawExpressionDataFile(ExpressionExperiment ee, QuantitationType type, boolean forceWrite, long timeout, TimeUnit timeUnit)
LockedPath	ExpressionDataFileService.writeOrLocateTabularSingleCellExpressionData(ExpressionExperiment ee, QuantitationType qt, int fetchSize, boolean forceWrite)	Write single-cell expression data to a standard location for a given quantitation type in tabular format.
LockedPath	ExpressionDataFileServiceImpl.writeOrLocateTabularSingleCellExpressionData(ExpressionExperiment ee, QuantitationType qt, int fetchSize, boolean forceWrite)

Methods in ubic.gemma.core.analysis.service that return types with arguments of type LockedPath

Modifier and Type	Method	Description
Optional<LockedPath>	ExpressionDataFileService.getMetadataFile(ExpressionExperiment ee, ExpressionExperimentMetaFileType type, boolean exclusive)	Locate a metadata file.
Optional<LockedPath>	ExpressionDataFileServiceImpl.getMetadataFile(ExpressionExperiment ee, ExpressionExperimentMetaFileType type, boolean exclusive)
Optional<LockedPath>	ExpressionDataFileService.writeOrLocateDesignFile(ExpressionExperiment ee, boolean forceWrite)	Locate or create an experimental design file for a given experiment.
Optional<LockedPath>	ExpressionDataFileService.writeOrLocateDesignFile(ExpressionExperiment ee, boolean forceWrite, long timeout, TimeUnit timeUnit)
Optional<LockedPath>	ExpressionDataFileServiceImpl.writeOrLocateDesignFile(ExpressionExperiment ee, boolean forceWrite)
Optional<LockedPath>	ExpressionDataFileServiceImpl.writeOrLocateDesignFile(ExpressionExperiment ee, boolean forceWrite, long timeout, TimeUnit timeUnit)
Collection<LockedPath>	ExpressionDataFileService.writeOrLocateDiffExpressionDataFiles(ExpressionExperiment ee, boolean forceWrite)	Locate or create the differential expression data file(s) for a given experiment.
Collection<LockedPath>	ExpressionDataFileServiceImpl.writeOrLocateDiffExpressionDataFiles(ExpressionExperiment ee, boolean forceWrite)
Optional<LockedPath>	ExpressionDataFileService.writeOrLocateJSONProcessedExpressionDataFile(ExpressionExperiment ee, boolean forceWrite, boolean filtered)
Optional<LockedPath>	ExpressionDataFileServiceImpl.writeOrLocateJSONProcessedExpressionDataFile(ExpressionExperiment ee, boolean forceWrite, boolean filtered)
Optional<LockedPath>	ExpressionDataFileService.writeOrLocateProcessedDataFile(ExpressionExperiment ee, boolean filtered, boolean forceWrite)	Locate or create a data file containing the 'preferred and masked' expression data matrix, with filtering for low expression applied (currently supports default settings only).
Optional<LockedPath>	ExpressionDataFileService.writeOrLocateProcessedDataFile(ExpressionExperiment ee, boolean filtered, boolean forceWrite, long timeout, TimeUnit timeUnit)
Optional<LockedPath>	ExpressionDataFileServiceImpl.writeOrLocateProcessedDataFile(ExpressionExperiment ee, boolean filtered, boolean forceWrite)
Optional<LockedPath>	ExpressionDataFileServiceImpl.writeOrLocateProcessedDataFile(ExpressionExperiment ee, boolean filtered, boolean forceWrite, long timeout, TimeUnit timeUnit)

Uses of LockedPath in ubic.gemma.core.util.locking

Methods in ubic.gemma.core.util.locking that return LockedPath

Modifier and Type	Method	Description
LockedPath	FileLockManager.acquirePathLock(Path path, boolean exclusive)	Lock a given path.
LockedPath	FileLockManagerImpl.acquirePathLock(Path path, boolean exclusive)
LockedPath	LockedPath.steal()	Steal this lock.
LockedPath	LockedPath.stealWithPath(Path path)	Steal this lock with a different path.
LockedPath	LockedPath.toExclusive()	Convert this lock to an exclusive lock.
LockedPath	LockedPath.toExclusive(long timeout, TimeUnit timeUnit)	Try to convert this lock to an exclusive lock.
LockedPath	LockedPath.toShared()	Convert this lock to a shared lock.
LockedPath	FileLockManager.tryAcquirePathLock(Path path, boolean exclusive, long timeout, TimeUnit timeUnit)	Attempt to lock a path.
LockedPath	FileLockManagerImpl.tryAcquirePathLock(Path path, boolean exclusive, long timeout, TimeUnit timeUnit)

Uses of LockedPath in ubic.gemma.rest.providers

Methods in ubic.gemma.rest.providers with parameters of type LockedPath

Modifier and Type	Method	Description
long	LockedPathProvider.getSize(LockedPath lockedPath, Class<?> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType)
long	MexBundlerProvider.getSize(LockedPath lockedPath, Class<?> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType)
void	LockedPathProvider.writeTo(LockedPath lockedPath, Class<?> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType, javax.ws.rs.core.MultivaluedMap<String,Object> httpHeaders, OutputStream entityStream)
void	MexBundlerProvider.writeTo(LockedPath lockedPath, Class<?> type, Type genericType, Annotation[] annotations, javax.ws.rs.core.MediaType mediaType, javax.ws.rs.core.MultivaluedMap<String,Object> httpHeaders, OutputStream entityStream)