Class ExperimentExpressionLevelsValueObject.GeneElementExpressionsValueObject

java.lang.Object

ubic.gemma.model.expression.bioAssayData.ExperimentExpressionLevelsValueObject.GeneElementExpressionsValueObject

All Implemented Interfaces:

Serializable

Enclosing class:

ExperimentExpressionLevelsValueObject

public static class ExperimentExpressionLevelsValueObject.GeneElementExpressionsValueObject
extends Object
implements Serializable

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
GeneElementExpressionsValueObject()
GeneElementExpressionsValueObject(String geneOfficialSymbol, Integer geneNcbiId, List<DoubleVectorValueObject> vectors, boolean keepGeneNonSpecific, String mode)
GeneElementExpressionsValueObject(String geneOfficialSymbol, String geneOfficialName, Integer geneNcbiId, String geneEnsemblId, Double correctedPvalue, Double pvalue, Double log2FoldChange, List<DoubleVectorValueObject> vectors, boolean keepGeneNonSpecific, String mode)

Method Summary

Modifier and Type	Method	Description
Double	getCorrectedPvalue()	FDR-corrected p-value for the contrast represented by the result-set used to populate this VO.
String	getGeneEnsemblId()
Integer	getGeneNcbiId()
String	getGeneOfficialName()
String	getGeneOfficialSymbol()
Double	getLog2FoldChange()	Log2 fold change for the primary contrast of the represented result-set.
Double	getPvalue()	Uncorrected p-value for the contrast represented by the result-set used to populate this VO.
List<ExperimentExpressionLevelsValueObject.VectorElementValueObject>	getVectors()

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

GeneElementExpressionsValueObject

public GeneElementExpressionsValueObject()

GeneElementExpressionsValueObject

public GeneElementExpressionsValueObject(String geneOfficialSymbol,
 Integer geneNcbiId,
 List<DoubleVectorValueObject> vectors,
 boolean keepGeneNonSpecific,
 @Nullable
 String mode)

GeneElementExpressionsValueObject

public GeneElementExpressionsValueObject(String geneOfficialSymbol,
 @Nullable
 String geneOfficialName,
 Integer geneNcbiId,
 @Nullable
 String geneEnsemblId,
 @Nullable
 Double correctedPvalue,
 @Nullable
 Double pvalue,
 @Nullable
 Double log2FoldChange,
 List<DoubleVectorValueObject> vectors,
 boolean keepGeneNonSpecific,
 @Nullable
 String mode)

Method Details

getVectors

public List<ExperimentExpressionLevelsValueObject.VectorElementValueObject> getVectors()

getGeneOfficialSymbol

public String getGeneOfficialSymbol()

getGeneOfficialName

@Nullable
public String getGeneOfficialName()

getGeneNcbiId

public Integer getGeneNcbiId()

getGeneEnsemblId

@Nullable
public String getGeneEnsemblId()

getCorrectedPvalue

@Nullable
public Double getCorrectedPvalue()

FDR-corrected p-value for the contrast represented by the result-set used to populate this VO. Only set for the /datasets/{id}/expressions/differential endpoint; null otherwise.

getPvalue

@Nullable
public Double getPvalue()

Uncorrected p-value for the contrast represented by the result-set used to populate this VO. Only set for the /datasets/{id}/expressions/differential endpoint; null otherwise.

getLog2FoldChange

@Nullable
public Double getLog2FoldChange()

Log2 fold change for the primary contrast of the represented result-set. For multi-contrast result sets the producer picks the contrast on the gene's most-significant row (smallest corrected p-value). Only set for the /datasets/{id}/expressions/differential endpoint; null otherwise.