Uses of Class
ubic.gemma.model.expression.experiment.ExpressionExperimentSetValueObject

Packages that use ExpressionExperimentSetValueObject

Package	Description
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.analysis.expression
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.rest

Uses of ExpressionExperimentSetValueObject in ubic.gemma.model.expression.experiment

Subclasses of ExpressionExperimentSetValueObject in ubic.gemma.model.expression.experiment

Modifier and Type	Class	Description
class	FreeTextExpressionExperimentResultsValueObject
class	SessionBoundExpressionExperimentSetValueObject

Classes in ubic.gemma.model.expression.experiment that implement interfaces with type arguments of type ExpressionExperimentSetValueObject

Modifier and Type	Class	Description
class	ExpressionExperimentSetValueObject

Methods in ubic.gemma.model.expression.experiment that return types with arguments of type ExpressionExperimentSetValueObject

Modifier and Type	Method	Description
Collection<ExpressionExperimentSetValueObject>	ExpressionExperimentDetailsValueObject.getExpressionExperimentSets()	EE sets this experiment is part of.

Methods in ubic.gemma.model.expression.experiment with parameters of type ExpressionExperimentSetValueObject

Modifier and Type	Method	Description
int	ExpressionExperimentSetValueObject.compareTo(ExpressionExperimentSetValueObject arg0)

Method parameters in ubic.gemma.model.expression.experiment with type arguments of type ExpressionExperimentSetValueObject

Modifier and Type	Method	Description
void	ExpressionExperimentDetailsValueObject.setExpressionExperimentSets(Collection<ExpressionExperimentSetValueObject> expressionExperimentSets)	EE sets this experiment is part of.

Uses of ExpressionExperimentSetValueObject in ubic.gemma.persistence.service.analysis.expression

Subclasses with type arguments of type ExpressionExperimentSetValueObject in ubic.gemma.persistence.service.analysis.expression

Modifier and Type	Class	Description
class	ExpressionExperimentSetDaoImpl

Subinterfaces with type arguments of type ExpressionExperimentSetValueObject in ubic.gemma.persistence.service.analysis.expression

Modifier and Type	Interface	Description
interface	ExpressionExperimentSetDao

Methods in ubic.gemma.persistence.service.analysis.expression that return ExpressionExperimentSetValueObject

Modifier and Type	Method	Description
protected ExpressionExperimentSetValueObject	ExpressionExperimentSetDaoImpl.doLoadValueObject(ExpressionExperimentSet entity)
ExpressionExperimentSetValueObject	ExpressionExperimentSetDao.loadValueObject(Long id, boolean loadEEIds)
ExpressionExperimentSetValueObject	ExpressionExperimentSetDaoImpl.loadValueObject(Long id, boolean loadEEIds)

Methods in ubic.gemma.persistence.service.analysis.expression that return types with arguments of type ExpressionExperimentSetValueObject

Modifier and Type	Method	Description
List<ExpressionExperimentSetValueObject>	ExpressionExperimentSetDaoImpl.doLoadValueObjects(Collection<ExpressionExperimentSet> entities)
Collection<ExpressionExperimentSetValueObject>	ExpressionExperimentSetDao.loadAllValueObjects(boolean loadEEIds)
Collection<ExpressionExperimentSetValueObject>	ExpressionExperimentSetDaoImpl.loadAllValueObjects(boolean loadEEIds)
List<ExpressionExperimentSetValueObject>	ExpressionExperimentSetDao.loadValueObjects(Collection<Long> eeSetIds, boolean loadEEIds)
List<ExpressionExperimentSetValueObject>	ExpressionExperimentSetDaoImpl.loadValueObjects(Collection<Long> eeSetIds, boolean loadEEIds)

Uses of ExpressionExperimentSetValueObject in ubic.gemma.persistence.service.expression.experiment

Subclasses with type arguments of type ExpressionExperimentSetValueObject in ubic.gemma.persistence.service.expression.experiment

Modifier and Type	Class	Description
class	ExpressionExperimentSetServiceImpl	Spring Service base class for ubic.gemma.model.analysis.expression.ExpressionExperimentSetService, provides access to all services and entities referenced by this service.

Subinterfaces with type arguments of type ExpressionExperimentSetValueObject in ubic.gemma.persistence.service.expression.experiment

Modifier and Type	Interface	Description
interface	ExpressionExperimentSetService

Methods in ubic.gemma.persistence.service.expression.experiment that return ExpressionExperimentSetValueObject

Modifier and Type	Method	Description
ExpressionExperimentSetValueObject	ExpressionExperimentSetService.loadValueObjectById(Long id, boolean loadEEIds)	Get a value object for the id param.
ExpressionExperimentSetValueObject	ExpressionExperimentSetServiceImpl.loadValueObjectById(Long id)
ExpressionExperimentSetValueObject	ExpressionExperimentSetServiceImpl.loadValueObjectById(Long id, boolean loadEEIds)
ExpressionExperimentSetValueObject	ExpressionExperimentSetValueObjectHelper.updateNameAndDescription(ExpressionExperimentSetValueObject eeSetVO, boolean loadEEIds)	Updates the database record for the param experiment set value object (permission permitting) with the value object's name and description.
ExpressionExperimentSetValueObject	ExpressionExperimentSetValueObjectHelperImpl.updateNameAndDescription(ExpressionExperimentSetValueObject eeSetVO, boolean loadEEIds)

Methods in ubic.gemma.persistence.service.expression.experiment that return types with arguments of type ExpressionExperimentSetValueObject

Modifier and Type	Method	Description
Collection<ExpressionExperimentSetValueObject>	ExpressionExperimentSetService.loadAllExperimentSetValueObjects(boolean loadEEIds)	Security filtering is handled by the call to load the set entities ubic.gemma.model.analysis.expression.ExpressionExperimentSetService.loadAllExperimentSetsWithTaxon()
Collection<ExpressionExperimentSetValueObject>	ExpressionExperimentSetServiceImpl.loadAllExperimentSetValueObjects(boolean loadEEIds)
Collection<ExpressionExperimentSetValueObject>	ExpressionExperimentSetService.loadMySetValueObjects(boolean loadEEIds)	load the user's sets
Collection<ExpressionExperimentSetValueObject>	ExpressionExperimentSetServiceImpl.loadMySetValueObjects(boolean loadEEIds)
List<ExpressionExperimentSetValueObject>	ExpressionExperimentSetServiceImpl.loadValueObjectsByIds(Collection<Long> eeSetIds)

Methods in ubic.gemma.persistence.service.expression.experiment with parameters of type ExpressionExperimentSetValueObject

Modifier and Type	Method	Description
ExpressionExperimentSet	ExpressionExperimentSetValueObjectHelper.convertToEntity(ExpressionExperimentSetValueObject eesvo)
ExpressionExperimentSet	ExpressionExperimentSetValueObjectHelperImpl.convertToEntity(ExpressionExperimentSetValueObject setVO)	Tries to load an existing experiment set with the param's id, if no experiment can be loaded, create a new one with id = null.
ExpressionExperimentSet	ExpressionExperimentSetValueObjectHelper.create(ExpressionExperimentSetValueObject eesvo)	Create an experiment set from a VO.
ExpressionExperimentSet	ExpressionExperimentSetValueObjectHelperImpl.create(ExpressionExperimentSetValueObject eesvo)
void	ExpressionExperimentSetValueObjectHelper.delete(ExpressionExperimentSetValueObject eesvo)	Delete the experiment set corresponding to the given VO.
void	ExpressionExperimentSetValueObjectHelperImpl.delete(ExpressionExperimentSetValueObject eesvo)
void	ExpressionExperimentSetValueObjectHelper.update(ExpressionExperimentSetValueObject eesvo)	Update corresponding entity based on value object
void	ExpressionExperimentSetValueObjectHelperImpl.update(ExpressionExperimentSetValueObject eesvo)
ExpressionExperimentSetValueObject	ExpressionExperimentSetValueObjectHelper.updateNameAndDescription(ExpressionExperimentSetValueObject eeSetVO, boolean loadEEIds)	Updates the database record for the param experiment set value object (permission permitting) with the value object's name and description.
ExpressionExperimentSetValueObject	ExpressionExperimentSetValueObjectHelperImpl.updateNameAndDescription(ExpressionExperimentSetValueObject eeSetVO, boolean loadEEIds)

Uses of ExpressionExperimentSetValueObject in ubic.gemma.rest

Methods in ubic.gemma.rest that return types with arguments of type ExpressionExperimentSetValueObject

Modifier and Type	Method	Description
ResponseDataObject<ExpressionExperimentSetValueObject>	ExperimentSetsWebService.getExperimentSet(Long id, boolean includeMembers)
PaginatedResponseDataObject<ExpressionExperimentSetValueObject>	ExperimentSetsWebService.getExperimentSets(boolean mine, String query, boolean includeMembers, OffsetArg offsetArg, LimitArg limitArg)
ResponseDataObject<ExpressionExperimentSetValueObject>	ExperimentSetsWebService.updateExperimentSet(Long id, ExperimentSetsWebService.ExperimentSetRequest req)
ResponseDataObject<ExpressionExperimentSetValueObject>	ExperimentSetsWebService.updateExperimentSetMembers(Long id, ExperimentSetsWebService.ExperimentSetMembersRequest req)