Uses of Class
ubic.gemma.model.genome.sequenceAnalysis.BlatResultValueObject

Packages that use BlatResultValueObject

Package	Description
ubic.gemma.core.analysis.sequence
ubic.gemma.model.analysis.sequence
ubic.gemma.persistence.service.genome.sequenceAnalysis

Uses of BlatResultValueObject in ubic.gemma.core.analysis.sequence

Methods in ubic.gemma.core.analysis.sequence with parameters of type BlatResultValueObject

Modifier and Type	Method	Description
static Integer	ProbeMapUtils.hashBlatResult(BlatResultValueObject br)	Compute a hash for the result based only on the characteristics of the alignment (that is, not the Id)

Uses of BlatResultValueObject in ubic.gemma.model.analysis.sequence

Methods in ubic.gemma.model.analysis.sequence that return BlatResultValueObject

Modifier and Type	Method	Description
BlatResultValueObject	GeneMappingSummary.getBlatResult()
BlatResultValueObject	GeneMappingSummaryValueObject.getBlatResult()	The alignment this mapping rests on, carrying the scores (identity, score), the genomic coordinates, and the probe's biological sequence under querySequence.

Methods in ubic.gemma.model.analysis.sequence with parameters of type BlatResultValueObject

Modifier and Type	Method	Description
void	GeneMappingSummary.setBlatResult(BlatResultValueObject blatResult2)
void	GeneMappingSummaryValueObject.setBlatResult(BlatResultValueObject blatResult)	The alignment this mapping rests on, carrying the scores (identity, score), the genomic coordinates, and the probe's biological sequence under querySequence.

Constructors in ubic.gemma.model.analysis.sequence with parameters of type BlatResultValueObject

Modifier	Constructor	Description
	GeneMappingSummaryValueObject(BlatResultValueObject blatResult, List<GeneReferenceValueObject> genes)

Uses of BlatResultValueObject in ubic.gemma.persistence.service.genome.sequenceAnalysis

Subclasses with type arguments of type BlatResultValueObject in ubic.gemma.persistence.service.genome.sequenceAnalysis

Modifier and Type	Class	Description
class	BlatResultDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.genome.sequenceAnalysis.BlatResult.
class	BlatResultServiceImpl	Spring Service base class for BlatResultService, provides access to all services and entities referenced by this service.

Subinterfaces with type arguments of type BlatResultValueObject in ubic.gemma.persistence.service.genome.sequenceAnalysis

Modifier and Type	Interface	Description
interface	BlatResultDao
interface	BlatResultService

Methods in ubic.gemma.persistence.service.genome.sequenceAnalysis that return BlatResultValueObject

Modifier and Type	Method	Description
protected BlatResultValueObject	BlatResultDaoImpl.doLoadValueObject(BlatResult entity)