Package ubic.gemma.persistence.service.analysis.expression.diff

Interface GeneDiffExMetaAnalysisDao

All Superinterfaces:

BaseDao<GeneDifferentialExpressionMetaAnalysis>

All Known Implementing Classes:

GeneDiffExMetaAnalysisDaoImpl

public interface GeneDiffExMetaAnalysisDao
extends BaseDao<GeneDifferentialExpressionMetaAnalysis>

Author:

Paul

Method Summary

Modifier and Type	Method	Description
Collection<GeneDifferentialExpressionMetaAnalysis>	findByExperiment(BioAssaySet experiment)
Map<BioAssaySet,Collection<GeneDifferentialExpressionMetaAnalysis>>	findByExperiments(Collection<? extends BioAssaySet> experiments)
Collection<GeneDifferentialExpressionMetaAnalysis>	findByName(String name)
Collection<GeneDifferentialExpressionMetaAnalysis>	findByTaxon(Taxon taxon)
Collection<IncludedResultSetInfoValueObject>	findIncludedResultSetsInfoById(long analysisId)
Collection<GeneDifferentialExpressionMetaAnalysisSummaryValueObject>	findMetaAnalyses(Collection<Long> metaAnalysisIds)
Collection<GeneDifferentialExpressionMetaAnalysisResultValueObject>	findResultsById(long analysisId)
Collection<Long>	getExperimentsWithAnalysis(Collection<Long> idsToFilter)
GeneDifferentialExpressionMetaAnalysisResult	loadResult(Long idResult)
GeneDifferentialExpressionMetaAnalysis	loadWithResultId(Long idResult)
void	removeForExperiment(BioAssaySet ee)

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Method Details

findIncludedResultSetsInfoById

Collection<IncludedResultSetInfoValueObject> findIncludedResultSetsInfoById(long analysisId)

Parameters:

analysisId - id

Returns:

a collection of included result set info value objects using the given meta-analysis id

findMetaAnalyses

Collection<GeneDifferentialExpressionMetaAnalysisSummaryValueObject> findMetaAnalyses(Collection<Long> metaAnalysisIds)

Parameters:

metaAnalysisIds - ids

Returns:

a collection of summary value objects using the given ids of meta-analyses

findResultsById

Collection<GeneDifferentialExpressionMetaAnalysisResultValueObject> findResultsById(long analysisId)

Parameters:

analysisId - id

Returns:

a collection of result value objects using the given meta-analysis id

getExperimentsWithAnalysis

Collection<Long> getExperimentsWithAnalysis(Collection<Long> idsToFilter)

loadResult

GeneDifferentialExpressionMetaAnalysisResult loadResult(Long idResult)

loadWithResultId

GeneDifferentialExpressionMetaAnalysis loadWithResultId(Long idResult)

findByExperiment

Collection<GeneDifferentialExpressionMetaAnalysis> findByExperiment(BioAssaySet experiment)

findByExperiments

Map<BioAssaySet,Collection<GeneDifferentialExpressionMetaAnalysis>> findByExperiments(Collection<? extends BioAssaySet> experiments)

findByName

Collection<GeneDifferentialExpressionMetaAnalysis> findByName(String name)

findByTaxon

Collection<GeneDifferentialExpressionMetaAnalysis> findByTaxon(Taxon taxon)

removeForExperiment

void removeForExperiment(BioAssaySet ee)