Package ubic.gemma.persistence.service.analysis.expression.diff

Class GeneDiffExMetaAnalysisServiceImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractService<GeneDifferentialExpressionMetaAnalysis>

ubic.gemma.persistence.service.analysis.expression.diff.GeneDiffExMetaAnalysisServiceImpl

All Implemented Interfaces:

AnalysisService<GeneDifferentialExpressionMetaAnalysis>, GeneDiffExMetaAnalysisService, BaseImmutableService<GeneDifferentialExpressionMetaAnalysis>, BaseReadOnlyService<GeneDifferentialExpressionMetaAnalysis>, BaseService<GeneDifferentialExpressionMetaAnalysis>, SecurableBaseImmutableService<GeneDifferentialExpressionMetaAnalysis>, SecurableBaseReadOnlyService<GeneDifferentialExpressionMetaAnalysis>, SecurableBaseService<GeneDifferentialExpressionMetaAnalysis>

@Service
public class GeneDiffExMetaAnalysisServiceImpl
extends AbstractService<GeneDifferentialExpressionMetaAnalysis>
implements GeneDiffExMetaAnalysisService

Author:

Paul

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractService

log

Constructor Summary

Constructors

Constructor	Description
GeneDiffExMetaAnalysisServiceImpl(GeneDiffExMetaAnalysisDao mainDao)

Method Summary

Modifier and Type	Method	Description
BaseValueObject	delete(Long id)
Collection<GeneDifferentialExpressionMetaAnalysis>	findByName(String name)
Collection<GeneDifferentialExpressionMetaAnalysis>	findByTaxon(Taxon taxon)
Collection<IncludedResultSetInfoValueObject>	findIncludedResultSetsInfoById(long analysisId)
Collection<GeneDifferentialExpressionMetaAnalysisSummaryValueObject>	findMetaAnalyses(Collection<Long> metaAnalysisIds)
Collection<GeneDifferentialExpressionMetaAnalysisResultValueObject>	findResultsById(long analysisId)

Methods inherited from class ubic.gemma.persistence.service.AbstractService

countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, getElementClass, loadOrFail, loadOrFail

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseImmutableService

create, create, findOrCreate, remove, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseReadOnlyService

find, findOrFail, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.SecurableBaseService

save, save, update, update

Constructor Details

GeneDiffExMetaAnalysisServiceImpl

@Autowired
public GeneDiffExMetaAnalysisServiceImpl(GeneDiffExMetaAnalysisDao mainDao)

Method Details

delete

@Transactional
public BaseValueObject delete(Long id)

Specified by:

delete in interface GeneDiffExMetaAnalysisService

findByTaxon

@Transactional(readOnly=true)
public Collection<GeneDifferentialExpressionMetaAnalysis> findByTaxon(Taxon taxon)

Specified by:

findByTaxon in interface GeneDiffExMetaAnalysisService

findIncludedResultSetsInfoById

@Transactional(readOnly=true)
public Collection<IncludedResultSetInfoValueObject> findIncludedResultSetsInfoById(long analysisId)

Specified by:

findIncludedResultSetsInfoById in interface GeneDiffExMetaAnalysisService

findMetaAnalyses

@Transactional(readOnly=true)
public Collection<GeneDifferentialExpressionMetaAnalysisSummaryValueObject> findMetaAnalyses(Collection<Long> metaAnalysisIds)

Specified by:

findMetaAnalyses in interface GeneDiffExMetaAnalysisService

findResultsById

@Transactional(readOnly=true)
public Collection<GeneDifferentialExpressionMetaAnalysisResultValueObject> findResultsById(long analysisId)

Specified by:

findResultsById in interface GeneDiffExMetaAnalysisService

findByName

@Transactional(readOnly=true)
public Collection<GeneDifferentialExpressionMetaAnalysis> findByName(String name)

Specified by:

findByName in interface GeneDiffExMetaAnalysisService