Package ubic.gemma.persistence.service.expression.bioAssayData

Interface CachedProcessedExpressionDataVectorService

All Known Implementing Classes:

CachedProcessedExpressionDataVectorServiceImpl

public interface CachedProcessedExpressionDataVectorService

A service that provides cached ProcessedExpressionDataVector in the form of DoubleVectorValueObject.

Method Summary

Modifier and Type	Method	Description
Collection<DoubleVectorValueObject>	getProcessedDataArrays(Collection<? extends BioAssaySet> expressionExperiments, Collection<Long> genes)	Retrieve processed vectors by genes and experiments.
Collection<DoubleVectorValueObject>	getProcessedDataArrays(BioAssaySet expressionExperiment)	Retrieve processed vectors for a given experiment or subset.
Collection<DoubleVectorValueObject>	getProcessedDataArrays(BioAssaySet expressionExperiment, Collection<Long> genes)	Retrieve processed vectors by genes for a given experiment or subset.
Collection<DoubleVectorValueObject>	getProcessedDataArraysByProbe(Collection<? extends BioAssaySet> expressionExperiments, Collection<CompositeSequence> probes)	Retrieves processed vectors by probes and experiments
Collection<DoubleVectorValueObject>	getProcessedDataArraysByProbeIds(BioAssaySet ee, Collection<Long> probes)
Collection<DoubleVectorValueObject>	getRandomProcessedDataArrays(BioAssaySet expressionExperiment, int limit)	Retrieve random processed vectors for a given experiment or subset.

Method Detail

getProcessedDataArrays

Collection<DoubleVectorValueObject> getProcessedDataArrays(BioAssaySet expressionExperiment)

Retrieve processed vectors for a given experiment or subset.

getProcessedDataArrays

Collection<DoubleVectorValueObject> getProcessedDataArrays(BioAssaySet expressionExperiment,
                                                           Collection<Long> genes)

Retrieve processed vectors by genes for a given experiment or subset.

getRandomProcessedDataArrays

Collection<DoubleVectorValueObject> getRandomProcessedDataArrays(BioAssaySet expressionExperiment,
                                                                 int limit)

Retrieve random processed vectors for a given experiment or subset.

getProcessedDataArrays

Collection<DoubleVectorValueObject> getProcessedDataArrays(Collection<? extends BioAssaySet> expressionExperiments,
                                                           Collection<Long> genes)

Retrieve processed vectors by genes and experiments.

getProcessedDataArraysByProbe

Collection<DoubleVectorValueObject> getProcessedDataArraysByProbe(Collection<? extends BioAssaySet> expressionExperiments,
                                                                  Collection<CompositeSequence> probes)

Retrieves processed vectors by probes and experiments

Parameters:

expressionExperiments - EEs

probes - composite sequences

Returns:

double vector vos

getProcessedDataArraysByProbeIds

Collection<DoubleVectorValueObject> getProcessedDataArraysByProbeIds(BioAssaySet ee,
                                                                     Collection<Long> probes)