Package ubic.gemma.persistence.service.expression.bioAssayData

Class RawAndProcessedExpressionDataVectorDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<T>

ubic.gemma.persistence.service.expression.bioAssayData.AbstractDesignElementDataVectorDao<DesignElementDataVector>

ubic.gemma.persistence.service.expression.bioAssayData.RawAndProcessedExpressionDataVectorDaoImpl

All Implemented Interfaces:

BaseDao<DesignElementDataVector>, DesignElementDataVectorDao<DesignElementDataVector>, RawAndProcessedExpressionDataVectorDao

@Repository
public class RawAndProcessedExpressionDataVectorDaoImpl
extends AbstractDesignElementDataVectorDao<DesignElementDataVector>
implements RawAndProcessedExpressionDataVectorDao

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

elementClass, log

Constructor Summary

Constructors

Constructor	Description
RawAndProcessedExpressionDataVectorDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method	Description
DesignElementDataVector	find(DesignElementDataVector entity)	Does a look up for the given entity in the persistent storage, usually looking for a specific identifier ( either id or a string property).
DesignElementDataVector	load(Long id)	Loads the entity with given id from the persistent storage.
Collection<DesignElementDataVector>	load(Collection<Long> ids)	This implementation is temporary and attempts to best replicate the behaviour of loading entities by multiple IDs introduced in Hibernate 5.
int	removeByCompositeSequence(CompositeSequence cs)	Remove all raw and processed vectors for a given probe.

Methods inherited from class ubic.gemma.persistence.service.expression.bioAssayData.AbstractDesignElementDataVectorDao

find, find, find, findByExpressionExperiment, thaw, thaw

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getIdentifierPropertyName, getSessionFactory, loadAll, loadReference, loadReference, remove, remove, remove, save, save, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, findOrCreate, getElementClass, getIdentifierPropertyName, loadAll, loadReference, loadReference, remove, remove, remove, save, save, update, update

Methods inherited from interface ubic.gemma.persistence.service.expression.bioAssayData.DesignElementDataVectorDao

find, find, find, findByExpressionExperiment, thaw, thaw

Constructor Detail

RawAndProcessedExpressionDataVectorDaoImpl

@Autowired
public RawAndProcessedExpressionDataVectorDaoImpl(SessionFactory sessionFactory)

Method Detail

load

public DesignElementDataVector load(Long id)

Description copied from interface: BaseDao

Loads the entity with given id from the persistent storage.

Specified by:

load in interface BaseDao<DesignElementDataVector>

Overrides:

load in class AbstractDao<DesignElementDataVector>

Parameters:

id - the id of entity to load.

Returns:

the entity with given ID, or null if such entity does not exist or if the passed ID was null

See Also:

Session.get(Class, Serializable)

load

public Collection<DesignElementDataVector> load(Collection<Long> ids)

Description copied from class: AbstractDao

This implementation is temporary and attempts to best replicate the behaviour of loading entities by multiple IDs introduced in Hibernate 5. Read more about this.

Specified by:

load in interface BaseDao<DesignElementDataVector>

Overrides:

load in class AbstractDao<DesignElementDataVector>

Parameters:

ids - the IDs of entities to be loaded. If some IDs are not found or null, they are skipped.

Returns:

collection of entities with given ids.

find

public DesignElementDataVector find(DesignElementDataVector entity)

Description copied from interface: BaseDao

Does a look up for the given entity in the persistent storage, usually looking for a specific identifier ( either id or a string property).

Specified by:

find in interface BaseDao<DesignElementDataVector>

Overrides:

find in class AbstractDao<DesignElementDataVector>

Parameters:

entity - the entity to look for.

Returns:

an entity that was found in the persistent storage, or null if no such entity was found.

removeByCompositeSequence

public int removeByCompositeSequence(CompositeSequence cs)

Description copied from interface: RawAndProcessedExpressionDataVectorDao

Remove all raw and processed vectors for a given probe.

Specified by:

removeByCompositeSequence in interface RawAndProcessedExpressionDataVectorDao

Returns:

the number of removed raw and processed vectors