Class RawAndProcessedExpressionDataVectorDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<BulkExpressionDataVector>

ubic.gemma.persistence.service.expression.bioAssayData.AbstractDesignElementDataVectorDao<BulkExpressionDataVector>

ubic.gemma.persistence.service.expression.bioAssayData.RawAndProcessedExpressionDataVectorDaoImpl

All Implemented Interfaces:

BaseDao<BulkExpressionDataVector>, DesignElementDataVectorDao<BulkExpressionDataVector>, RawAndProcessedExpressionDataVectorDao

@Repository
public class RawAndProcessedExpressionDataVectorDaoImpl
extends AbstractDesignElementDataVectorDao<BulkExpressionDataVector>
implements RawAndProcessedExpressionDataVectorDao

Field Summary

Fields inherited from class AbstractDao

log

Constructor Summary

Constructors

Constructor	Description
RawAndProcessedExpressionDataVectorDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method	Description
Collection<BulkExpressionDataVector>	find(Collection<QuantitationType> quantitationTypes)
Collection<BulkExpressionDataVector>	find(QuantitationType quantitationType)
BulkExpressionDataVector	find(BulkExpressionDataVector entity)	Does a look-up for the given entity in the persistent storage, usually looking for a specific identifier if Identifiable.getId() is set or a business key.
Collection<BulkExpressionDataVector>	findByExpressionExperiment(ExpressionExperiment ee)
BulkExpressionDataVector	load(Long id)	Loads the entity with given id from the persistent storage.
Collection<BulkExpressionDataVector>	load(Collection<Long> ids)	Loads entities with given ids form the persistent storage.
int	removeByCompositeSequence(CompositeSequence cs)	Remove all raw and processed vectors for a given probe.

Methods inherited from class AbstractDesignElementDataVectorDao

find, thaw, thaw

Methods inherited from class AbstractDao

countAll, create, create, findByProperty, findByPropertyIn, findIdByProperty, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getEntityName, getIdentifierPropertyName, getSessionFactory, loadAll, loadReference, loadReference, reload, reload, remove, remove, save, save, streamAll, streamAll, streamQuery, update, update

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface BaseDao

countAll, create, create, findOrCreate, getElementClass, loadAll, loadReference, loadReference, reload, reload, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from interface DesignElementDataVectorDao

find, thaw, thaw

Constructor Details

RawAndProcessedExpressionDataVectorDaoImpl

@Autowired
public RawAndProcessedExpressionDataVectorDaoImpl(SessionFactory sessionFactory)

Method Details

load

public BulkExpressionDataVector load(Long id)

Description copied from interface: BaseDao

Loads the entity with given id from the persistent storage.

Specified by:

load in interface BaseDao<BulkExpressionDataVector>

Overrides:

load in class AbstractDao<BulkExpressionDataVector>

Parameters:

id - the id of entity to load.

Returns:

the entity with given ID, or null if such entity does not exist or if the passed ID was null

See Also:

• Session.get(Class, Object)

load

public Collection<BulkExpressionDataVector> load(Collection<Long> ids)

Description copied from interface: BaseDao

Loads entities with given ids form the persistent storage.

Specified by:

load in interface BaseDao<BulkExpressionDataVector>

Overrides:

load in class AbstractDao<BulkExpressionDataVector>

Parameters:

ids - the IDs of entities to be loaded. If some IDs are not found or null, they are skipped.

Returns:

collection of entities with given ids.

See Also:

• Session.get(Class, Object)

find

public BulkExpressionDataVector find(BulkExpressionDataVector entity)

Description copied from interface: BaseDao

Does a look-up for the given entity in the persistent storage, usually looking for a specific identifier if Identifiable.getId() is set or a business key.

Specified by:

find in interface BaseDao<BulkExpressionDataVector>

Overrides:

find in class AbstractDao<BulkExpressionDataVector>

Parameters:

entity - the entity to look for.

Returns:

an entity that was found in the persistent storage, or null if no such entity was found.

find

public Collection<BulkExpressionDataVector> find(QuantitationType quantitationType)

Specified by:

find in interface DesignElementDataVectorDao<BulkExpressionDataVector>

Overrides:

find in class AbstractDesignElementDataVectorDao<BulkExpressionDataVector>

find

public Collection<BulkExpressionDataVector> find(Collection<QuantitationType> quantitationTypes)

Specified by:

find in interface DesignElementDataVectorDao<BulkExpressionDataVector>

Overrides:

find in class AbstractDesignElementDataVectorDao<BulkExpressionDataVector>

findByExpressionExperiment

public Collection<BulkExpressionDataVector> findByExpressionExperiment(ExpressionExperiment ee)

Specified by:

findByExpressionExperiment in interface DesignElementDataVectorDao<BulkExpressionDataVector>

Overrides:

findByExpressionExperiment in class AbstractDesignElementDataVectorDao<BulkExpressionDataVector>

removeByCompositeSequence

public int removeByCompositeSequence(CompositeSequence cs)

Description copied from interface: RawAndProcessedExpressionDataVectorDao

Remove all raw and processed vectors for a given probe.

Specified by:

removeByCompositeSequence in interface RawAndProcessedExpressionDataVectorDao

Returns:

the number of removed raw and processed vectors