Package ubic.gemma.persistence.service.expression.bioAssayData

Class AbstractDesignElementDataVectorDao<T extends BulkExpressionDataVector>

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<T>

ubic.gemma.persistence.service.expression.bioAssayData.AbstractDesignElementDataVectorDao<T>

All Implemented Interfaces:

BaseDao<T>, DesignElementDataVectorDao<T>

Direct Known Subclasses:

ProcessedExpressionDataVectorDaoImpl, RawAndProcessedExpressionDataVectorDaoImpl, RawExpressionDataVectorDaoImpl

public abstract class AbstractDesignElementDataVectorDao<T extends BulkExpressionDataVector>
extends AbstractDao<T>
implements DesignElementDataVectorDao<T>

Author:

pavlidis

See Also:

• DesignElementDataVector

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

log

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AbstractDesignElementDataVectorDao(Class<T> elementClass, SessionFactory sessionFactory)
protected	AbstractDesignElementDataVectorDao(Class<T> elementClass, SessionFactory sessionFactory, ClassMetadata classMetadata)

Method Summary

Modifier and Type	Method	Description
Collection<T>	find(Collection<QuantitationType> quantitationTypes)
Collection<T>	find(QuantitationType quantitationType)
Collection<T>	find(BioAssayDimension bioAssayDimension)
Collection<T>	findByExpressionExperiment(ExpressionExperiment ee)
void	thaw(Collection<T> vectors)	Thaw a collection of vectors.
void	thaw(T vector)	Thaw the given vector.

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, streamQuery, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Constructor Details

AbstractDesignElementDataVectorDao

protected AbstractDesignElementDataVectorDao(Class<T> elementClass,
 SessionFactory sessionFactory)

AbstractDesignElementDataVectorDao

protected AbstractDesignElementDataVectorDao(Class<T> elementClass,
 SessionFactory sessionFactory,
 ClassMetadata classMetadata)

Method Details

find

public Collection<T> find(BioAssayDimension bioAssayDimension)

Specified by:

find in interface DesignElementDataVectorDao<T extends BulkExpressionDataVector>

find

public Collection<T> find(Collection<QuantitationType> quantitationTypes)

Specified by:

find in interface DesignElementDataVectorDao<T extends BulkExpressionDataVector>

thaw

public void thaw(Collection<T> vectors)

Description copied from interface: DesignElementDataVectorDao

Thaw a collection of vectors.

Specified by:

thaw in interface DesignElementDataVectorDao<T extends BulkExpressionDataVector>

thaw

public void thaw(T vector)

Description copied from interface: DesignElementDataVectorDao

Thaw the given vector.

Specified by:

thaw in interface DesignElementDataVectorDao<T extends BulkExpressionDataVector>

find

public Collection<T> find(QuantitationType quantitationType)

Specified by:

find in interface DesignElementDataVectorDao<T extends BulkExpressionDataVector>

findByExpressionExperiment

public Collection<T> findByExpressionExperiment(ExpressionExperiment ee)

Specified by:

findByExpressionExperiment in interface DesignElementDataVectorDao<T extends BulkExpressionDataVector>