Package ubic.gemma.persistence.service.expression.bioAssayData

Class RawExpressionDataVectorDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<T>

ubic.gemma.persistence.service.expression.bioAssayData.AbstractDesignElementDataVectorDao<RawExpressionDataVector>

ubic.gemma.persistence.service.expression.bioAssayData.RawExpressionDataVectorDaoImpl

All Implemented Interfaces:

BaseDao<RawExpressionDataVector>, DesignElementDataVectorDao<RawExpressionDataVector>, RawExpressionDataVectorDao

@Repository
public class RawExpressionDataVectorDaoImpl
extends AbstractDesignElementDataVectorDao<RawExpressionDataVector>
implements RawExpressionDataVectorDao

Author:

paul

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

elementClass, log

Constructor Summary

Constructors

Constructor	Description
RawExpressionDataVectorDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method	Description
Collection<RawExpressionDataVector>	find(Collection<CompositeSequence> designElements, QuantitationType quantitationType)
Collection<RawExpressionDataVector>	find(ArrayDesign arrayDesign, QuantitationType quantitationType)
RawExpressionDataVector	find(RawExpressionDataVector designElementDataVector)	Does a look up for the given entity in the persistent storage, usually looking for a specific identifier ( either id or a string property).
Collection<RawExpressionDataVector>	findByExpressionExperiment(ExpressionExperiment ee, QuantitationType quantitationType)

Methods inherited from class ubic.gemma.persistence.service.expression.bioAssayData.AbstractDesignElementDataVectorDao

find, find, find, findByExpressionExperiment, thaw, thaw

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, remove, remove, remove, save, save, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, remove, remove, remove, save, save, update, update

Methods inherited from interface ubic.gemma.persistence.service.expression.bioAssayData.DesignElementDataVectorDao

find, find, find, findByExpressionExperiment, thaw, thaw

Constructor Detail

RawExpressionDataVectorDaoImpl

@Autowired
public RawExpressionDataVectorDaoImpl(SessionFactory sessionFactory)

Method Detail

find

public Collection<RawExpressionDataVector> find(ArrayDesign arrayDesign,
                                                QuantitationType quantitationType)

Specified by:

find in interface RawExpressionDataVectorDao

find

public Collection<RawExpressionDataVector> find(Collection<CompositeSequence> designElements,
                                                QuantitationType quantitationType)

Specified by:

find in interface RawExpressionDataVectorDao

findByExpressionExperiment

public Collection<RawExpressionDataVector> findByExpressionExperiment(ExpressionExperiment ee,
                                                                      QuantitationType quantitationType)

Specified by:

findByExpressionExperiment in interface RawExpressionDataVectorDao

find

public RawExpressionDataVector find(RawExpressionDataVector designElementDataVector)

Description copied from interface: BaseDao

Does a look up for the given entity in the persistent storage, usually looking for a specific identifier ( either id or a string property).

Specified by:

find in interface BaseDao<RawExpressionDataVector>

Overrides:

find in class AbstractDao<RawExpressionDataVector>

Parameters:

designElementDataVector - the entity to look for.

Returns:

an entity that was found in the persistent storage, or null if no such entity was found.