Interface RawExpressionDataVectorService
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- All Superinterfaces:
BaseReadOnlyService<RawExpressionDataVector>
- All Known Implementing Classes:
RawExpressionDataVectorServiceImpl
public interface RawExpressionDataVectorService
- Author:
- Paul
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Method Summary
All Methods Instance Methods Abstract Methods Deprecated Methods Modifier and Type Method Description Collection<T>
find(Collection<QuantitationType> quantitationTypes)
Find specific type (DesignElementDataVectorService
) of vectors that meet the given criteria.Collection<RawExpressionDataVector>
find(Collection<CompositeSequence> designElements, QuantitationType quantitationType)
Collection<T>
find(QuantitationType quantitationType)
Find specific type (DesignElementDataVectorService
) of vectors that meet the given criteria.Collection<T>
find(BioAssayDimension bioAssayDimension)
Find specific type (raw or processed, depending on the service) of vectors that meet the given criteria.Collection<T>
findAndThaw(Collection<QuantitationType> quantitationTypes)
Collection<T>
findAndThaw(QuantitationType quantitationType)
Find and thaw specific type (DesignElementDataVectorService
) of vectors that meet the given criteria.Collection<T>
findAndThaw(BioAssayDimension bioAssayDimension)
Collection<RawExpressionDataVector>
findByExpressionExperiment(ExpressionExperiment ee, QuantitationType quantitationType)
RawExpressionDataVector
load(Long id)
Loads object with given ID.Collection<T>
thaw(Collection<T> vectors)
Deprecated.UsefindAndThaw(QuantitationType)
,findAndThaw(Collection)
orfindAndThaw(BioAssayDimension)
instead, it's much more efficient.-
Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService
countAll, find, findOrFail, getElementClass, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail
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Method Detail
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load
@Secured("GROUP_ADMIN") RawExpressionDataVector load(Long id)
Description copied from interface:BaseReadOnlyService
Loads object with given ID.- Specified by:
load
in interfaceBaseReadOnlyService<RawExpressionDataVector>
- Parameters:
id
- the ID of entity to be loaded.- Returns:
- the entity with matching ID, or null if the entity does not exist or if the passed ID was null
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find
@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATAVECTOR_COLLECTION_READ"}) Collection<RawExpressionDataVector> find(Collection<CompositeSequence> designElements, QuantitationType quantitationType)
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findByExpressionExperiment
@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATAVECTOR_COLLECTION_READ"}) Collection<RawExpressionDataVector> findByExpressionExperiment(ExpressionExperiment ee, QuantitationType quantitationType)
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find
@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATAVECTOR_COLLECTION_READ"}) Collection<T> find(BioAssayDimension bioAssayDimension)
Find specific type (raw or processed, depending on the service) of vectors that meet the given criteria.- Parameters:
bioAssayDimension
- the BA dimension- Returns:
- the found vectors of type
DesignElementDataVectorService
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findAndThaw
@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATAVECTOR_COLLECTION_READ"}) Collection<T> findAndThaw(BioAssayDimension bioAssayDimension)
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find
@Secured("GROUP_ADMIN") Collection<T> find(Collection<QuantitationType> quantitationTypes)
Find specific type (DesignElementDataVectorService
) of vectors that meet the given criteria.- Parameters:
quantitationTypes
- the QTs- Returns:
- the found vectors of type
DesignElementDataVectorService
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findAndThaw
@Secured("GROUP_ADMIN") Collection<T> findAndThaw(Collection<QuantitationType> quantitationTypes)
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find
@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATAVECTOR_COLLECTION_READ"}) Collection<T> find(QuantitationType quantitationType)
Find specific type (DesignElementDataVectorService
) of vectors that meet the given criteria.- Parameters:
quantitationType
- the QT- Returns:
- the found vectors of type
DesignElementDataVectorService
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findAndThaw
@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATAVECTOR_COLLECTION_READ"}) Collection<T> findAndThaw(QuantitationType quantitationType)
Find and thaw specific type (DesignElementDataVectorService
) of vectors that meet the given criteria.
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thaw
@CheckReturnValue @Deprecated Collection<T> thaw(Collection<T> vectors)
Deprecated.UsefindAndThaw(QuantitationType)
,findAndThaw(Collection)
orfindAndThaw(BioAssayDimension)
instead, it's much more efficient.Thaw the given vectors.
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