Package ubic.gemma.persistence.service.expression.bioAssayData

Interface BulkExpressionDataVectorService<T extends BulkExpressionDataVector>

All Superinterfaces:

BaseReadOnlyService<T>

All Known Subinterfaces:

ProcessedExpressionDataVectorService, RawAndProcessedExpressionDataVectorService, RawExpressionDataVectorService

All Known Implementing Classes:

AbstractBulkExpressionDataVectorService, ProcessedExpressionDataVectorServiceImpl, RawAndProcessedExpressionDataVectorServiceImpl, RawExpressionDataVectorServiceImpl

public interface BulkExpressionDataVectorService<T extends BulkExpressionDataVector>
extends BaseReadOnlyService<T>

Method Summary

Modifier and Type	Method	Description
Collection<T>	find(Collection<QuantitationType> quantitationTypes)	Find specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.
Collection<T>	find(QuantitationType quantitationType)	Find specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.
Collection<T>	find(BioAssayDimension bioAssayDimension)	Find specific type (raw or processed, depending on the service) of vectors that meet the given criteria.
Collection<T>	findAndThaw(Collection<QuantitationType> quantitationTypes)
Collection<T>	findAndThaw(QuantitationType quantitationType)	Find and thaw specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.
Collection<T>	findAndThaw(BioAssayDimension bioAssayDimension)
Collection<T>	thaw(Collection<T> vectors)	Deprecated. Use findAndThaw(QuantitationType), findAndThaw(Collection) or findAndThaw(BioAssayDimension) instead, it's much more efficient.

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Method Details

find

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATA_VECTOR_COLLECTION_READ"})
Collection<T> find(BioAssayDimension bioAssayDimension)

Find specific type (raw or processed, depending on the service) of vectors that meet the given criteria.

Parameters:

bioAssayDimension - the BA dimension

Returns:

the found vectors of type BulkExpressionDataVectorService

findAndThaw

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATA_VECTOR_COLLECTION_READ"})
Collection<T> findAndThaw(BioAssayDimension bioAssayDimension)

find

@Secured("GROUP_ADMIN")
Collection<T> find(Collection<QuantitationType> quantitationTypes)

Find specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.

Parameters:

quantitationTypes - the QTs

Returns:

the found vectors of type BulkExpressionDataVectorService

findAndThaw

@Secured("GROUP_ADMIN")
Collection<T> findAndThaw(Collection<QuantitationType> quantitationTypes)

find

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATA_VECTOR_COLLECTION_READ"})
Collection<T> find(QuantitationType quantitationType)

Find specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.

Parameters:

quantitationType - the QT

Returns:

the found vectors of type BulkExpressionDataVectorService

findAndThaw

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_DATA_VECTOR_COLLECTION_READ"})
Collection<T> findAndThaw(QuantitationType quantitationType)

Find and thaw specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.

thaw

@CheckReturnValue
@Deprecated
Collection<T> thaw(Collection<T> vectors)

Deprecated.

Use findAndThaw(QuantitationType), findAndThaw(Collection) or findAndThaw(BioAssayDimension) instead, it's much more efficient.

Thaw the given vectors.