Package ubic.gemma.persistence.service.expression.bioAssayData

Class AbstractBulkExpressionDataVectorService<T extends BulkExpressionDataVector>

java.lang.Object

ubic.gemma.persistence.service.AbstractService<T>

ubic.gemma.persistence.service.expression.bioAssayData.AbstractBulkExpressionDataVectorService<T>

All Implemented Interfaces:

BaseImmutableService<T>, BaseReadOnlyService<T>, BaseService<T>, BulkExpressionDataVectorService<T>

Direct Known Subclasses:

ProcessedExpressionDataVectorServiceImpl, RawAndProcessedExpressionDataVectorServiceImpl, RawExpressionDataVectorServiceImpl

public abstract class AbstractBulkExpressionDataVectorService<T extends BulkExpressionDataVector>
extends AbstractService<T>
implements BulkExpressionDataVectorService<T>

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractService

log

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AbstractBulkExpressionDataVectorService(DesignElementDataVectorDao<T> mainDao)

Method Summary

Modifier and Type	Method	Description
Collection<T>	find(Collection<QuantitationType> quantitationTypes)	Find specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.
Collection<T>	find(QuantitationType quantitationType)	Find specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.
Collection<T>	find(BioAssayDimension bioAssayDimension)	Find specific type (raw or processed, depending on the service) of vectors that meet the given criteria.
Collection<T>	findAndThaw(Collection<QuantitationType> quantitationTypes)
Collection<T>	findAndThaw(QuantitationType qt)	Find and thaw specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.
Collection<T>	findAndThaw(BioAssayDimension bioAssayDimension)
Collection<T>	thaw(Collection<T> vectors)	Thaw the given vectors.

Methods inherited from class ubic.gemma.persistence.service.AbstractService

countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Constructor Details

AbstractBulkExpressionDataVectorService

protected AbstractBulkExpressionDataVectorService(DesignElementDataVectorDao<T> mainDao)

Method Details

find

@Transactional(readOnly=true)
public Collection<T> find(BioAssayDimension bioAssayDimension)

Description copied from interface: BulkExpressionDataVectorService

Find specific type (raw or processed, depending on the service) of vectors that meet the given criteria.

Specified by:

find in interface BulkExpressionDataVectorService<T extends BulkExpressionDataVector>

Parameters:

bioAssayDimension - the BA dimension

Returns:

the found vectors of type BulkExpressionDataVectorService

findAndThaw

@Transactional(readOnly=true)
public Collection<T> findAndThaw(BioAssayDimension bioAssayDimension)

Specified by:

findAndThaw in interface BulkExpressionDataVectorService<T extends BulkExpressionDataVector>

find

@Transactional(readOnly=true)
public Collection<T> find(Collection<QuantitationType> quantitationTypes)

Description copied from interface: BulkExpressionDataVectorService

Find specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.

Specified by:

find in interface BulkExpressionDataVectorService<T extends BulkExpressionDataVector>

Parameters:

quantitationTypes - the QTs

Returns:

the found vectors of type BulkExpressionDataVectorService

findAndThaw

@Transactional(readOnly=true)
public Collection<T> findAndThaw(Collection<QuantitationType> quantitationTypes)

Specified by:

findAndThaw in interface BulkExpressionDataVectorService<T extends BulkExpressionDataVector>

find

@Transactional(readOnly=true)
public Collection<T> find(QuantitationType quantitationType)

Description copied from interface: BulkExpressionDataVectorService

Find specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.

Specified by:

find in interface BulkExpressionDataVectorService<T extends BulkExpressionDataVector>

Parameters:

quantitationType - the QT

Returns:

the found vectors of type BulkExpressionDataVectorService

findAndThaw

@Transactional(readOnly=true)
public Collection<T> findAndThaw(QuantitationType qt)

Description copied from interface: BulkExpressionDataVectorService

Find and thaw specific type (BulkExpressionDataVectorService) of vectors that meet the given criteria.

Specified by:

findAndThaw in interface BulkExpressionDataVectorService<T extends BulkExpressionDataVector>

thaw

@Transactional(readOnly=true)
public Collection<T> thaw(Collection<T> vectors)

Description copied from interface: BulkExpressionDataVectorService

Thaw the given vectors.

Specified by:

thaw in interface BulkExpressionDataVectorService<T extends BulkExpressionDataVector>