Uses of Interface
ubic.gemma.persistence.service.genome.biosequence.BioSequenceService

Packages that use BioSequenceService

Package	Description
ubic.gemma.core.loader.expression.arrayDesign
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.genome.biosequence
ubic.gemma.persistence.util

Uses of BioSequenceService in ubic.gemma.core.loader.expression.arrayDesign

Constructors in ubic.gemma.core.loader.expression.arrayDesign with parameters of type BioSequenceService

Modifier	Constructor	Description
	ArrayDesignProbeMapperServiceImpl(AnnotationAssociationService annotationAssociationService, ArrayDesignAnnotationService arrayDesignAnnotationService, ArrayDesignReportService arrayDesignReportService, ArrayDesignService arrayDesignService, ProbeMapper probeMapper, BioSequenceService bioSequenceService, BlatResultService blatResultService, CompositeSequenceService compositeSequenceService, ExpressionDataFileService expressionDataFileService, GeneProductService geneProductService, GeneService geneService, Persister persisterHelper, org.springframework.core.task.TaskExecutor taskExecutor)
	ArrayDesignSequenceAlignmentServiceImpl(ArrayDesignReportService arrayDesignReportService, ArrayDesignService arrayDesignService, BioSequenceService bioSequenceService, Persister persisterHelper)
	ArrayDesignSequenceProcessingServiceImpl(ArrayDesignReportService arrayDesignReportService, ArrayDesignService arrayDesignService, BioSequenceService bioSequenceService, ExternalDatabaseService externalDatabaseService, Persister persisterHelper, String fastaCmdExe)

Uses of BioSequenceService in ubic.gemma.persistence.service.expression.designElement

Constructors in ubic.gemma.persistence.service.expression.designElement with parameters of type BioSequenceService

Modifier	Constructor	Description
	CompositeSequenceServiceImpl(CompositeSequenceDao compositeSequenceDao, BioSequenceService bioSequenceService, GeneProductService geneProductService, BlatResultService blatResultService, ArrayDesignService arrayDesignService)

Uses of BioSequenceService in ubic.gemma.persistence.service.genome.biosequence

Classes in ubic.gemma.persistence.service.genome.biosequence that implement BioSequenceService

Modifier and Type	Class	Description
class	BioSequenceServiceImpl	Spring Service base class for BioSequenceService, provides access to all services and entities referenced by this service.

Uses of BioSequenceService in ubic.gemma.persistence.util

Methods in ubic.gemma.persistence.util with parameters of type BioSequenceService

Modifier and Type	Method	Description
org.springframework.core.convert.ConversionService	ValueObjectConfig.valueObjectConversionService(ArrayDesignService arrayDesignService, BibliographicReferenceService bibliographicReferenceService, BioSequenceService bioSequenceService, CompositeSequenceService compositeSequenceService, ExpressionExperimentService expressionExperimentService, ExpressionExperimentSetService experimentSetService, GeneService geneService, GeneSetService geneSetService, BlacklistedEntityService blacklistedEntityService)