Class CompositeSequenceFactory.Builder

java.lang.Object

ubic.gemma.core.util.test.fixture.CompositeSequenceFactory.Builder

Enclosing class:

CompositeSequenceFactory

public static final class CompositeSequenceFactory.Builder
extends Object

Fluent builder for a CompositeSequence. All withXxx(...) methods return this for chaining. Single-use; call build() once.

Author:

Phase 3 (Vision section 3 - test-fixture rewrite)

Method Summary

Modifier and Type	Method	Description
CompositeSequence	build()	Build, persist, and return the CS.
CompositeSequenceFactory.Builder	withArrayDesign(ArrayDesign ad)
CompositeSequenceFactory.Builder	withBioSequence(boolean v)	If true (default), attach a persistent BioSequence (with a GenBank DatabaseEntry) to the CS.
CompositeSequenceFactory.Builder	withDescription(String d)
CompositeSequenceFactory.Builder	withName(String n)
CompositeSequenceFactory.Builder	withTaxon(Taxon t)	Set the taxon used for the auto-created BioSequence.

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

withName

public CompositeSequenceFactory.Builder withName(String n)

withDescription

public CompositeSequenceFactory.Builder withDescription(String d)

withArrayDesign

public CompositeSequenceFactory.Builder withArrayDesign(ArrayDesign ad)

withTaxon

public CompositeSequenceFactory.Builder withTaxon(Taxon t)

Set the taxon used for the auto-created BioSequence. Ignored if withBioSequence(boolean) is false or if the AD has a primaryTaxon already (the BS taxon then mirrors that).

withBioSequence

public CompositeSequenceFactory.Builder withBioSequence(boolean v)

If true (default), attach a persistent BioSequence (with a GenBank DatabaseEntry) to the CS. If false, the CS is persisted without a biological characteristic.

build

public CompositeSequence build()

Build, persist, and return the CS. The ArrayDesign and optional BioSequence are persisted first (no cascade from CS); the CS itself is persisted via CompositeSequenceService.create(CompositeSequence).