Package ubic.gemma.persistence.service.expression.experiment

Class ExpressionExperimentDaoTest

java.lang.Object
org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests
ubic.gemma.core.util.test.BaseDatabaseTest
ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDaoTest
All Implemented Interfaces:
org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware
@ContextConfiguration @TestExecutionListeners(WithSecurityContextTestExecutionListener.class) public class ExpressionExperimentDaoTest extends BaseDatabaseTest

  • Constructor Details

    • ExpressionExperimentDaoTest

      public ExpressionExperimentDaoTest()

  • Method Details

    • removeFixtures

      public void removeFixtures()

    • loadTroubledIds

      public void loadTroubledIds()

    • testGetFilterableProperties

      public void testGetFilterableProperties()

    • testGetFilterWithStatementObject

      public void testGetFilterWithStatementObject()

    • testFilterWithStatementSecondObject

      @WithMockUser public void testFilterWithStatementSecondObject()

    • testThawTransientEntity

      public void testThawTransientEntity()

    • testThaw

      public void testThaw()

    • testThawLite

      public void testThawLite()

    • testThawLiter

      public void testThawLiter()

    • testLoadWithRefreshCacheMode

      public void testLoadWithRefreshCacheMode()

    • testLoadReference

      public void testLoadReference()

    • testLoadMultipleReferences

      public void testLoadMultipleReferences()

    • testGetTechnologyTypeUsageFrequency

      @WithMockUser public void testGetTechnologyTypeUsageFrequency()

    • testGetArrayDesignUsageFrequency

      @WithMockUser public void testGetArrayDesignUsageFrequency()

    • testGetOriginalPlatformUsageFrequency

      @WithMockUser public void testGetOriginalPlatformUsageFrequency()

    • testGetCategoriesWithUsageFrequency

      @WithMockUser(authorities="GROUP_ADMIN") public void testGetCategoriesWithUsageFrequency()

    • testGetCategoriesUsageFrequencyAsAnonymous

      @WithMockUser public void testGetCategoriesUsageFrequencyAsAnonymous()

    • testGetCategoriesUsageFrequencyWithIds

      public void testGetCategoriesUsageFrequencyWithIds()
      No ACL filtering is done when explicit IDs are provided, so this should work without WithMockUser.

    • testGetAnnotationUsageFrequency

      @WithMockUser(authorities="GROUP_ADMIN") public void testGetAnnotationUsageFrequency()

    • testGetAnnotationUsageFrequencyAsAnonymous

      @WithMockUser public void testGetAnnotationUsageFrequencyAsAnonymous()

    • testGetAnnotationUsageFrequencyWithLargeBatch

      @WithMockUser(authorities="GROUP_ADMIN") public void testGetAnnotationUsageFrequencyWithLargeBatch()

    • testGetAnnotationUsageFrequencyRetainMentionedTerm

      @WithMockUser(authorities="GROUP_ADMIN") public void testGetAnnotationUsageFrequencyRetainMentionedTerm()

    • testGetAnnotationUsageFrequencyExcludingFreeTextTerms

      @WithMockUser(authorities="GROUP_ADMIN") public void testGetAnnotationUsageFrequencyExcludingFreeTextTerms()

    • testGetAnnotationUsageFrequencyExcludingFreeTextCategories

      @WithMockUser(authorities="GROUP_ADMIN") public void testGetAnnotationUsageFrequencyExcludingFreeTextCategories()

    • testGetAnnotationUsageFrequencyExcludingUncategorizedTerms

      @WithMockUser(authorities="GROUP_ADMIN") public void testGetAnnotationUsageFrequencyExcludingUncategorizedTerms()

    • testGetAnnotationUsageFrequencyWithUncategorizedCategory

      @WithMockUser(authorities="GROUP_ADMIN") public void testGetAnnotationUsageFrequencyWithUncategorizedCategory()

    • testGetAnnotationUsageFrequencyWithIds

      public void testGetAnnotationUsageFrequencyWithIds()
      No ACL filtering is done when explicit IDs are provided, so this should work without WithMockUser.

    • testGetPerTaxonCount

      @WithMockUser("bob") public void testGetPerTaxonCount()

    • testFilterAndCountByArrayDesign

      @WithMockUser public void testFilterAndCountByArrayDesign()

    • testSubquery

      public void testSubquery()

    • testSubqueryWithMultipleJointures

      public void testSubqueryWithMultipleJointures()

    • testRemoveExperimentDeletesBioMaterials

      public void testRemoveExperimentDeletesBioMaterials()

    • testRemoveExperimentWithSharedBioMaterial

      public void testRemoveExperimentWithSharedBioMaterial()

    • removeWithBioAssayDimension

      public void removeWithBioAssayDimension()

    • testLoadValueObjectWithSingleCellData

      @WithMockUser public void testLoadValueObjectWithSingleCellData()

    • testGetAllAnnotations

      public void testGetAllAnnotations()

    • testGetAnnotationsByLevel

      public void testGetAnnotationsByLevel()

    • testGetRawDataVectors

      public void testGetRawDataVectors()

    • testAddRawDataVectors

      public void testAddRawDataVectors()

    • testAddRawDataVectorsWithNumberOfCells

      public void testAddRawDataVectorsWithNumberOfCells()

    • testRemoveAllRawDataVectors

      public void testRemoveAllRawDataVectors()

    • testRemoveRawDataVectors

      public void testRemoveRawDataVectors()

    • testRemoveRawDataVectorsWithDimension

      public void testRemoveRawDataVectorsWithDimension()

    • testRemoveRawDataVectorsWhenQtIsUnknown

      public void testRemoveRawDataVectorsWhenQtIsUnknown()

    • testRemoveRawDataVectorsWithNumberOfCells

      public void testRemoveRawDataVectorsWithNumberOfCells()

    • testReplaceRawDataVectors

      public void testReplaceRawDataVectors()

    • testReplaceRawDataVectorsWithNewDimension

      public void testReplaceRawDataVectorsWithNewDimension()

    • testCreateProcessedDataVectors

      public void testCreateProcessedDataVectors()

    • testCreateProcessedDataVectorsWithNonPersistentQt

      public void testCreateProcessedDataVectorsWithNonPersistentQt()

    • testRemoveProcessedDataVectors

      public void testRemoveProcessedDataVectors()

    • testReplaceProcessedDataVectors

      public void testReplaceProcessedDataVectors()

    • testReplaceProcessedDataVectorsReusingTheSameQT

      public void testReplaceProcessedDataVectorsReusingTheSameQT()

    • testReplaceProcessedDataVectorsWithDetachedExperiment

      public void testReplaceProcessedDataVectorsWithDetachedExperiment()

    • testGetGenesUsedByProcessedVectors

      public void testGetGenesUsedByProcessedVectors()

    • testGetArrayDesignUsed

      public void testGetArrayDesignUsed()