Class ExpressionExperimentSubSetDaoTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.util.test.BaseDatabaseTest5

ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSubSetDaoTest

@ContextConfiguration
public class ExpressionExperimentSubSetDaoTest
extends BaseDatabaseTest5

Nested Class Summary

Nested classes/interfaces inherited from class BaseDatabaseTest5

BaseDatabaseTest5.BaseDatabaseTestContextConfiguration

Field Summary

Fields inherited from class BaseDatabaseTest5

sessionFactory

Constructor Summary

Constructors

Constructor	Description
ExpressionExperimentSubSetDaoTest()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	testRemove()
void	testRemoveWhenBioAssayIsInADimensionThatIndexesData()	The reverse: vectors index their values by the assay's position in the dimension, so neither the assay nor the dimension may be touched.
void	testRemoveWhenBioAssayIsInADimensionThatIndexesNoData()	A dimension that indexes no data is garbage once the subset that owns its assays is gone; leaving it behind strands the assays forever, since the guard below would then refuse to ever delete them.
void	testRemoveWhenBioAssayIsOwnedByTheSubset()
void	testRemoveWhenBioAssayIsUsedByAnotherSubSet()	An assay can sit in a cell-type subset and in a further subset of it.
void	testRemoveWhenBioMaterialIsUsedByAnotherBioAssay()

Methods inherited from class BaseDatabaseTest5

flushAndClearSession

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExpressionExperimentSubSetDaoTest

public ExpressionExperimentSubSetDaoTest()

Method Details

setUp

@BeforeEach
public void setUp()

testRemove

@Test
public void testRemove()

testRemoveWhenBioAssayIsOwnedByTheSubset

@Test
public void testRemoveWhenBioAssayIsOwnedByTheSubset()

testRemoveWhenBioMaterialIsUsedByAnotherBioAssay

@Test
public void testRemoveWhenBioMaterialIsUsedByAnotherBioAssay()

testRemoveWhenBioAssayIsUsedByAnotherSubSet

@Test
public void testRemoveWhenBioAssayIsUsedByAnotherSubSet()

An assay can sit in a cell-type subset and in a further subset of it. The subset join table restricts on delete, so deleting the assay out from under the other subset aborts the whole removal.

testRemoveWhenBioAssayIsInADimensionThatIndexesNoData

@Test
public void testRemoveWhenBioAssayIsInADimensionThatIndexesNoData()

A dimension that indexes no data is garbage once the subset that owns its assays is gone; leaving it behind strands the assays forever, since the guard below would then refuse to ever delete them.

testRemoveWhenBioAssayIsInADimensionThatIndexesData

@Test
public void testRemoveWhenBioAssayIsInADimensionThatIndexesData()

The reverse: vectors index their values by the assay's position in the dimension, so neither the assay nor the dimension may be touched.