Class SingleCellExpressionExperimentServiceTest

java.lang.Object
ubic.gemma.core.util.test.BaseTest5
ubic.gemma.core.util.test.BaseDatabaseTest5
ubic.gemma.persistence.service.expression.experiment.SingleCellExpressionExperimentServiceTest
@ContextConfiguration public class SingleCellExpressionExperimentServiceTest extends BaseDatabaseTest5
Tests covering integration of single-cell.

  • Constructor Details

    • SingleCellExpressionExperimentServiceTest

      public SingleCellExpressionExperimentServiceTest()

  • Method Details

    • setUp

      @BeforeEach public void setUp()

    • resetMocks

      @AfterEach public void resetMocks()

    • testGetSingleCellDimensionWithoutCellIds

      @Test public void testGetSingleCellDimensionWithoutCellIds()

    • testGetSingleCellDataMatrix

      @Test public void testGetSingleCellDataMatrix()

    • testGetSingleCellDataVectors

      @Test public void testGetSingleCellDataVectors()

    • testAddSingleCellDataVectors

      @Test public void testAddSingleCellDataVectors()

    • testAddSingleCellDataVectorsWithInteger

      @Test public void testAddSingleCellDataVectorsWithInteger()

    • testAddSingleCellDataVectorsTwice

      @Test public void testAddSingleCellDataVectorsTwice()

    • testAddSingleCellDataVectorsWhenThereIsAlreadyAPreferredSetOfVectors

      @Test public void testAddSingleCellDataVectorsWhenThereIsAlreadyAPreferredSetOfVectors()

    • testReplaceVectors

      @Test public void testReplaceVectors()

    • testRemoveVectors

      @Test public void testRemoveVectors()

    • testRemoveVectorsSharingADimension

      @Test public void testRemoveVectorsSharingADimension()

    • testRelabelCellTypes

      @Test public void testRelabelCellTypes()

    • testGetPreferredCellTypeLabellingWhenNonUnique

      @Test public void testGetPreferredCellTypeLabellingWhenNonUnique()
      This a behaviour test when the labelling is not unique. This can be caused by multiple preferred single-cell QTs or multiple preferred cell type labellings.

    • testCreateCellTypeFactor

      @Test public void testCreateCellTypeFactor()

    • testCreateCellTypeFactorIgnoreCompatibleFactor

      @Test public void testCreateCellTypeFactorIgnoreCompatibleFactor()

    • testGetCellLevelCharacteristics

      @Test public void testGetCellLevelCharacteristics()

    • testAddDuplicatedCellLevelCharacteristics

      @Test public void testAddDuplicatedCellLevelCharacteristics()

    • testUpdateSparsityMetrics

      @Test public void testUpdateSparsityMetrics()