Uses of Class
ubic.gemma.core.analysis.expression.diff.AnalysisException

Packages that use AnalysisException

Package	Description
ubic.gemma.core.analysis.expression.diff

Uses of AnalysisException in ubic.gemma.core.analysis.expression.diff

Subclasses of AnalysisException in ubic.gemma.core.analysis.expression.diff

Modifier and Type	Class	Description
class	AllSubSetAnalysesFailedException	Exception raised when all subset analyses failed with an AnalysisException.
class	EbayesFailureException	Occurs when empirical bayes estimation fails.
class	InvalidQuantitationTypeConversionException	Exception raised when a log2 conversion fails.
class	NoFactorLeftForAnalysisException	Exception raised when suitable factor is left for analysis.
class	NoSampleLeftForAnalysisException	Exception raised when no sample is left for analysis.

Methods in ubic.gemma.core.analysis.expression.diff that throw AnalysisException

Modifier and Type	Method	Description
Collection<DifferentialExpressionAnalysis>	DiffExAnalyzer.run(ExpressionExperiment expressionExperiment, Map<FactorValue,ExpressionExperimentSubSet> subsets, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)	Analyze a dataset with a pre-existing subset structure.
Collection<DifferentialExpressionAnalysis>	DiffExAnalyzer.run(ExpressionExperiment expressionExperiment, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)	Analyze a dataset.
DifferentialExpressionAnalysis	DiffExAnalyzer.run(ExpressionExperimentSubSet subset, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)	Analyze a subset.
Collection<DifferentialExpressionAnalysis>	LinearModelAnalyzer.run(ExpressionExperiment ee, Map<FactorValue,ExpressionExperimentSubSet> subsets, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)
Collection<DifferentialExpressionAnalysis>	LinearModelAnalyzer.run(ExpressionExperiment expressionExperiment, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)	I apologize for this being so complicated.
DifferentialExpressionAnalysis	LinearModelAnalyzer.run(ExpressionExperimentSubSet subset, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)

Constructor parameters in ubic.gemma.core.analysis.expression.diff with type arguments of type AnalysisException

Constructor	Description
AllSubSetAnalysesFailedException(String message, Collection<AnalysisException> subsetExceptions, DifferentialExpressionAnalysisConfig config)