Uses of Class
ubic.gemma.core.analysis.expression.diff.AnalysisException

Packages that use AnalysisException

Package	Description
ubic.gemma.core.analysis.expression.diff

Uses of AnalysisException in ubic.gemma.core.analysis.expression.diff

Subclasses of AnalysisException in ubic.gemma.core.analysis.expression.diff

Modifier and Type	Class	Description
class	AllAnalysesFailedException	Exception raised when all analyses fail.
class	AllSubSetAnalysesFailedException	Exception raised when all subset analyses failed with an AnalysisException.
class	EbayesFailureException	Occurs when empirical bayes estimation fails.
class	FilteringRelatedAnalysisException	Exception raised when data filtering fails.
class	InvalidQuantitationTypeConversionException	Exception raised when a log2 conversion fails.
class	MeanVarianceFailureException	Exception raised when MeanVarianceEstimator fails.
class	MultipleBaselinesRequireSubsetException	Raised when a factor carries more than one explicitly marked baseline and the analysis was not configured with a subset factor.
class	NoFactorLeftForAnalysisException	Exception raised when suitable factor is left for analysis.

Methods in ubic.gemma.core.analysis.expression.diff that throw AnalysisException

Modifier and Type	Method	Description
Collection<DifferentialExpressionAnalysis>	DiffExAnalyzer.run(ExpressionExperiment expressionExperiment, Map<FactorValue, ExpressionExperimentSubSet> subsets, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)	Analyze a dataset with a pre-existing subset structure.
Collection<DifferentialExpressionAnalysis>	DiffExAnalyzer.run(ExpressionExperiment expressionExperiment, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)	Analyze a dataset.
DifferentialExpressionAnalysis	DiffExAnalyzer.run(ExpressionExperimentSubSet subset, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)	Analyze a subset.
Collection<DifferentialExpressionAnalysis>	LinearModelAnalyzer.run(ExpressionExperiment ee, Map<FactorValue, ExpressionExperimentSubSet> subsets, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)
Collection<DifferentialExpressionAnalysis>	LinearModelAnalyzer.run(ExpressionExperiment expressionExperiment, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)	I apologize for this being so complicated.
DifferentialExpressionAnalysis	LinearModelAnalyzer.run(ExpressionExperimentSubSet subset, ExpressionDataDoubleMatrix dmatrix, DifferentialExpressionAnalysisConfig config)	Check if a factor value should be excluded from the analysis.

Constructor parameters in ubic.gemma.core.analysis.expression.diff with type arguments of type AnalysisException

Modifier	Constructor	Description
	AllAnalysesFailedException(String message, Collection<? extends AnalysisException> analysisExceptions, DifferentialExpressionAnalysisConfig config)
	AllSubSetAnalysesFailedException(String message, Collection<? extends AnalysisException> subsetExceptions, DifferentialExpressionAnalysisConfig config)