Package ubic.gemma.core.analysis.service

Class DiffExAnalysisResultSetWriter

java.lang.Object

ubic.gemma.core.analysis.service.DiffExAnalysisResultSetWriter

public class DiffExAnalysisResultSetWriter
extends Object

Writer for DifferentialExpressionAnalysis.

Author:

paul, poirigui

Constructor Summary

Constructors

Constructor	Description
DiffExAnalysisResultSetWriter(EntityUrlBuilder entityUrlBuilder, BuildInfo buildInfo)

Method Summary

Modifier and Type	Method	Description
void	write(DifferentialExpressionAnalysis analysis, Map<CompositeSequence,String[]> geneAnnotations, DifferentialExpressionAnalysisConfig config, boolean hasSignificantBatchConfound, OutputStream stream)	Write a DifferentialExpressionAnalysis as a ZIP archive containing entries for the analysis and each result set.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DiffExAnalysisResultSetWriter

public DiffExAnalysisResultSetWriter(EntityUrlBuilder entityUrlBuilder,
 BuildInfo buildInfo)

Method Details

write

public void write(DifferentialExpressionAnalysis analysis,
 Map<CompositeSequence,String[]> geneAnnotations,
 @Nullable
 DifferentialExpressionAnalysisConfig config,
 boolean hasSignificantBatchConfound,
 OutputStream stream)
           throws IOException

Write a DifferentialExpressionAnalysis as a ZIP archive containing entries for the analysis and each result set.

Parameters:

analysis - the analysis to write

geneAnnotations - gene annotations include in each row

config - configuration used for the DE analysis

hasSignificantBatchConfound - whether a significant batch confound was detected, a warning will be included in the file if it is the case

stream - a stream where to write the resulting ZIP archive

Throws:

IOException