Class DataLoaderConfig
java.lang.Object
ubic.gemma.core.loader.expression.DataLoaderConfig
- Direct Known Subclasses:
SequencingDataLoaderConfig
- Author:
- poirigui
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Nested Class Summary
Nested ClassesModifier and TypeClassDescriptionstatic classDataLoaderConfig.DataLoaderConfigBuilder<C extends DataLoaderConfig,B extends DataLoaderConfig.DataLoaderConfigBuilder<C, B>> -
Constructor Summary
ConstructorsModifierConstructorDescriptionprotected -
Method Summary
Modifier and TypeMethodDescriptionstatic DataLoaderConfig.DataLoaderConfigBuilder<?, ?> builder()Load data from that specific path instead of looking up standard locations.Name of the QT to use if more than one is present in the data as perDataLoader.getQuantitationTypes().Override the name of the resulting QT.Override the scale type of the resulting QT.Override the type of the resulting QT.A file containing a mapping of sample names to bioassay names.booleanMark the QT as preferred.booleanMark the quantitation type as recomputed from raw data.booleanReplace the vectors of an existing QT.
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Constructor Details
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DataLoaderConfig
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Method Details
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builder
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getDataPath
Load data from that specific path instead of looking up standard locations. -
getQuantitationTypeName
Name of the QT to use if more than one is present in the data as perDataLoader.getQuantitationTypes().This may be set to null, in which case the loader must only detect a single QT.
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isReplaceExistingQuantitationType
public boolean isReplaceExistingQuantitationType()Replace the vectors of an existing QT.Requires
quantitationTypeNameto be set. -
getQuantitationTypeNewName
Override the name of the resulting QT. -
getQuantitationTypeNewType
Override the type of the resulting QT. -
getQuantitationTypeNewScaleType
Override the scale type of the resulting QT. -
isMarkQuantitationTypeAsRecomputedFromRawData
public boolean isMarkQuantitationTypeAsRecomputedFromRawData()Mark the quantitation type as recomputed from raw data.- See Also:
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isMarkQuantitationTypeAsPreferred
public boolean isMarkQuantitationTypeAsPreferred()Mark the QT as preferred.All other QTs of the same kind will be set to non-preferred as a result.
- See Also:
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getRenamingFile
A file containing a mapping of sample names to bioassay names.- See Also:
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